RnoEX0062385 @ rn6
Exon Skipping
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33049733-33055512:-
Coord C1 exon
chr3:33055464-33055512
Coord A exon
chr3:33053496-33053647
Coord C2 exon
chr3:33049733-33049906
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTTTTTTTTTTAGGTA
3' ss Score
13.01
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGAAGCTTTGCTGAAAACCTTTCGTTTCTTCTGGAAGCTTTGCAGAAAG
Seq A exon
GTAACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATCTTTTTGCTCATCAGAAAAACCAAACACTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAGACACCAATAGCAGTTATTGGCCTTACATGTAGACTG
Seq C2 exon
GATATTTTGGAACTCTTAGAAAAGAGAGTGAAGTCACGATTTTCTCACCGGCAGATACATTTAATGAATTCATTTGATTTTCCGCAATATTTGAAAATATTTAAAGAACAATTATCTCTACCTGCAGAATTCCCAGATAAGATTTTTGCTGAGAAATGGAATGAGAATGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021-'13-18,'13-15,15-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(10.3=100)
A:
PF131911=AAA_16=PD(28.4=86.3)
C2:
PF146291=ORC4_C=PU(14.1=46.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTGCTGAAAACCTTTCGT
R:
GAGCATTCTCATTCCATTTCTCAGC
Band lengths:
218-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]