MmuEX6102043 @ mm9
Exon Skipping
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70361101-70365582:+
Coord C1 exon
chr2:70361101-70361149
Coord A exon
chr2:70361388-70361424
Coord C2 exon
chr2:70365490-70365582
Length
37 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTTTCTCTTTCAGAAA
3' ss Score
12.67
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCATCAAAAAGCAGACAGAATGGCAGATTGCTATTGTATGATCCGAAGG
Seq A exon
AAAAACTGATGAGCGGCGCCAATAAAGAAAAGTCACA
Seq C2 exon
CAAAGCCCCCTTTGGACGCAGGCCGAGATTATCAAACAAGCTTTATACTTCTCCAGCGCAGATCCCGGGTGGAGCTAATGCATTCTCAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=1.000 C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACAGAATGGCAGATTGC
R:
GAATGCATTAGCTCCACCCGG
Band lengths:
124-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: