MmuEX6102043 @ mm10
Exon Skipping
Gene
ENSMUSG00000075302 | Erich2
Description
glutamate rich 2 [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70523044-70527525:+
Coord C1 exon
chr2:70523044-70523092
Coord A exon
chr2:70523331-70523367
Coord C2 exon
chr2:70527433-70527525
Length
37 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCTTTTCTCTTTCAGAAA
3' ss Score
12.67
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GCATCAAAAAGCAGACAGAATGGCAGATTGCTATTGTATGATCCGAAGG
Seq A exon
AAAAACTGATGAGCGGCGCCAATAAAGAAAAGTCACA
Seq C2 exon
CAAAGCCCCCTTTGGACGCAGGCCGAGATTATCAAACAAGCTTTATACTTCTCCAGCGCAGATCCCGGGTGGAGCTAATGCATTCTCAGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-'6-18,'6-13,15-18=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=1.000 C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGACAGAATGGCAGATTGC
R:
GAATGCATTAGCTCCACCCGG
Band lengths:
124-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types