RnoEX0033003 @ rn6
Exon Skipping
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56815837-56820209:+
Coord C1 exon
chr3:56815837-56815885
Coord A exon
chr3:56816093-56816129
Coord C2 exon
chr3:56820117-56820209
Length
37 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTTTTCTCTTTCAGAGA
3' ss Score
10.06
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GCACCCAAAAGCAGACAGAATGGCAGGTTGCTACTGTGTGATCCAAAGG
Seq A exon
AGAAACTGATGAGCGGCTCCAATAAAGAAAAGCCACA
Seq C2 exon
GAAATCCTCCTTTGGACGGAGACCAAGATTGTCCAGCAAGCTTTGTACTTCTCCAACACAGATCCCGGGTGGAGCTACTGTGTTCTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=1.000 C2=0.922
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGAATGGCAGGTTGCT
R:
AGAACACAGTAGCTCCACCCG
Band lengths:
124-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]