BtaEX0013245 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032846 | ERICH2
Description
Bos taurus glutamate-rich 2 (ERICH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102286]
Coordinates
chr2:25717322-25737956:-
Coord C1 exon
chr2:25737798-25737956
Coord A exon
chr2:25728743-25728779
Coord C2 exon
chr2:25717322-25717506
Length
37 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCTCTTTCAGAAA
3' ss Score
13.15
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GCTTACTCTGCTCCAACCGCGCACGCGCTAGCGCGCTGTCTCGTCTCCATGGCGACGCGACGTCTACTGCTCCACGCGCCCAACACCGAGCGAAGCAGGAGCTGGGCTAGCTTTCTATGTCAACCCTTCCGATGCTCCGCGTGAGGGGGCCACAGGCGG
Seq A exon
AAAAAGTGATGATTGAACCAAATGAAGGAATGTCAGA
Seq C2 exon
GTGAAATGAGCAAAAATGTAGTCATTGCAGAGCAGGAGAAAAATAATGAACATTGCCCTGAGGATATCAATGATAAGTTATCTGAATCAACAGATGATGATGGTGAGGATACCAGTGATGAAGATAAGGAGGAAGACAGCAACCCGAATAAGGATACTCATGCCCCGTTAGAGTTAATGACAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032846_MULTIEX1-1/3=C1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF046158=Utp14=PU(40.6=93.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCAACCCTTCCGATGCTC
R:
TGATATCCTCAGGGCAATGTTCA
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development