BtaEX0013246 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032846 | ERICH2
Description
Bos taurus glutamate-rich 2 (ERICH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102286]
Coordinates
chr2:25712969-25737956:-
Coord C1 exon
chr2:25737798-25737956
Coord A exon
chr2:25717322-25717506
Coord C2 exon
chr2:25712969-25713026
Length
185 bp
Sequences
Splice sites
3' ss Seq
AATTATGTATATTGTTTTAGGTG
3' ss Score
9.08
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCTTACTCTGCTCCAACCGCGCACGCGCTAGCGCGCTGTCTCGTCTCCATGGCGACGCGACGTCTACTGCTCCACGCGCCCAACACCGAGCGAAGCAGGAGCTGGGCTAGCTTTCTATGTCAACCCTTCCGATGCTCCGCGTGAGGGGGCCACAGGCGG
Seq A exon
GTGAAATGAGCAAAAATGTAGTCATTGCAGAGCAGGAGAAAAATAATGAACATTGCCCTGAGGATATCAATGATAAGTTATCTGAATCAACAGATGATGATGGTGAGGATACCAGTGATGAAGATAAGGAGGAAGACAGCAACCCGAATAAGGATACTCATGCCCCGTTAGAGTTAATGACAGAA
Seq C2 exon
TTCCTGAGAGCAGAAATGGGCCACGACTACCATTTGGCAAAAAAATTATGTCAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032846_MULTIEX1-2/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.450
Domain overlap (PFAM):
C1:
NA
A:
PF046158=Utp14=PU(40.6=93.3)
C2:
PF046158=Utp14=FE(13.8=100),PF148531=Fis1_TPR_C=PU(33.3=65.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTACTCTGCTCCAACCGC
R:
TTTTTGCCAAATGGTAGTCGTGG
Band lengths:
202-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development