HsaEX0000932 @ hg38
Exon Skipping
Gene
ENSG00000204334 | ERICH2
Description
glutamate rich 2 [Source:HGNC Symbol;Acc:HGNC:44395]
Coordinates
chr2:170782289-170792920:+
Coord C1 exon
chr2:170782289-170782389
Coord A exon
chr2:170784646-170784833
Coord C2 exon
chr2:170792863-170792920
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTAGGTATATTCTCTTTTAGGTG
3' ss Score
8.78
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TACTGAAAATAGAGTATCTTCAAGGAGTATCGAAAGTAAAGATATCTTAACAAATCTACAGTCTGACCTATTGTCATCTTCCTGCTTAAAAGAAAGCACAG
Seq A exon
GTGAAGTGAGCAAAGATGCAGTCATTGTAAAGCAGGAGAAAAATAATGAATATTGCCTTCAGGATATTGATGATAAATTGTCAGAATCAGCAGAGGATGATGGTGAAGATGATACCAATGATGAAGATGATGATGAAGATAGTAACCCTAAAAAGAATACTCAGGCCCCACTAGAGTTAATGGCAGAA
Seq C2 exon
TTTCTGAGAGCAGAAATGGCCCGAGAGTACCAGCTGGCAAAAAAATTATGTCAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204334-'3-9,'3-4,6-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.825 C2=0.150
Domain overlap (PFAM):
C1:
NA
A:
PF118713=DUF3391=FE(55.4=100),PF127532=Nro1=FE(53.0=100)
C2:
PF118713=DUF3391=FE(17.0=100),PF127532=Nro1=FE(16.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATCTTCAAGGAGTATCGAAAGT
R:
TTTTGCCAGCTGGTACTCTCG
Band lengths:
131-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development