HsaEX0000932 @ hg19
Exon Skipping
Gene
ENSG00000204334 | AC007405.7
Description
Uncharacterized protein LOC285141 [Source:UniProtKB/Swiss-Prot;Acc:A1L162]
Coordinates
chr2:171638751-171649430:+
Coord C1 exon
chr2:171638751-171638899
Coord A exon
chr2:171641156-171641343
Coord C2 exon
chr2:171649373-171649430
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTAGGTATATTCTCTTTTAGGTG
3' ss Score
8.78
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAAGGAAGTCCCTTCTAAGAATATTGCAAATAAAGTCTCTTTACAGACTACTGAAAATAGAGTATCTTCAAGGAGTATCGAAAGTAAAGATATCTTAACAAATCTACAGTCTGACCTATTGTCATCTTCCTGCTTAAAAGAAAGCACAG
Seq A exon
GTGAAGTGAGCAAAGATGCAGTCATTGTAAAGCAGGAGAAAAATAATGAATATTGCCTTCAGGATATTGATGATAAATTGTCAGAATCAGCAGAGGATGATGGTGAAGATGATACCAATGATGAAGATGATGATGAAGATAGTAACCCTAAAAAGAATACTCAGGCCCCACTAGAGTTAATGGCAGAA
Seq C2 exon
TTTCTGAGAGCAGAAATGGCCCGAGAGTACCAGCTGGCAAAAAAATTATGTCAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204334-'9-12,'9-11,11-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=0.786 C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF148531=Fis1_TPR_C=PU(33.3=65.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGTCCCTTCTAAGAATATTGCA
R:
TTTTGCCAGCTGGTACTCTCG
Band lengths:
189-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)