MmuEX6102042 @ mm9
Exon Skipping
Gene
ENSMUSG00000075302 | 4933404M02Rik
Description
RIKEN cDNA 4933404M02 gene [Source:MGI Symbol;Acc:MGI:1913998]
Coordinates
chr2:70369733-70374259:+
Coord C1 exon
chr2:70369733-70369881
Coord A exon
chr2:70372299-70372480
Coord C2 exon
chr2:70374202-70374259
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTATGTGTGTTCTGTTTCAGGTG
3' ss Score
13.32
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AAAAGAAGCCTCTTCAAAGAAGAGCGAAGATAAAGTCTCTTTTAAAAGTATTGAAAACAGACCATCCTCAAGGAGTACTGAAAATAAAGATGTCTTAACAAACCAGCAGTCCGGCCTGTGGTCATCTTCCTTCCTAAAAGAAAGCGCAG
Seq A exon
GTGAAACAAGCAAGGATTTGGTCCTTGCAAAGCAAGAGGGAAATAGTGACTATTGCCTTAAGGACATTGAAGAGAACTTGTCAGACTCGACAGATGGTGATGGTGAAGAGGACAGCAGCAACGACGATGACGAAGGCCCCACTAAGAAGGCGACTCAAGCCCCACTGGAGCTAATGGCAGAA
Seq C2 exon
TTCCTGAGAGCAGAAATGGGCCGAGACTACCAGCTGGCAAAAAAATTATGTCAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075302-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.754 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF148531=Fis1_TPR_C=PU(32.5=65.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGAAGAGCGAAGATAAAGTCT
R:
TTTTGCCAGCTGGTAGTCTCG
Band lengths:
178-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: