RnoEX6017354 @ rn6
Exon Skipping
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56824143-56835056:+
Coord C1 exon
chr3:56824143-56824276
Coord A exon
chr3:56829278-56829459
Coord C2 exon
chr3:56834999-56835056
Length
182 bp
Sequences
Splice sites
3' ss Seq
TTATGCGTGTTTCGTTTAAGGTG
3' ss Score
10.05
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AAAAGAAACCTCTTCAAAGAAGATTGAAGATAAAGTCTCTTTGAAAAGCAGTGAAAACAGACCTTCTTCAAGGAGTATTGAAACAAACCGGCAGTTCGACCTCTGGTCATCTTCCTTCCTAAAAGAAAGCTCAG
Seq A exon
GTGAAGTGAACAAGGATTTGGTCCTTGCAAAGCAAGAGAAAAATAGTGAGTATTGCCTTGAAGACATTGAGGAGAACTTGTCAGACTCAACGGATGGTGATGGCGAAGAGGACAGCAACAACGAAGACGACGAAGGCCCCGCTAAGAAGGAGACTCGAGCCCCACTGGAGCTAATGGCAGAA
Seq C2 exon
TTCCTGAGAGCAGAAATGGGTCGAGACTACCAGCTGGCAAAAAAGTTATGTCAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087-'9-12,'9-9,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=0.738 C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF148531=Fis1_TPR_C=PU(32.5=65.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAACCTCTTCAAAGAAGATTGAA
R:
TTTTGCCAGCTGGTAGTCTCG
Band lengths:
174-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]