MmuEX7004259 @ mm10
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:126963563-126967205:+
Coord C1 exon
chr7:126963563-126963757
Coord A exon
chr7:126966725-126966916
Coord C2 exon
chr7:126967014-126967205
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACCTGTCTGTCCTGTCCCAGTCA
3' ss Score
8.47
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AGGTCCCGAGAAACGATACGTGCCCGGAGCTACCACCACCTGAGTGGGGCTGGAGGACAGCATCCCACGGGGACCTTATCCGGGGTACAGTGCTCACCTATCAATGCGAGCCTGGCTATGAACTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTGTCCTGGAGCGCGGCGCCACCTGCCTGCCAAAAGA
Seq A exon
TCATGACTTGTGCTGACCCTGGCGAGATCACCAATGGCCATCGGACTGCCTCAGATGCTGGTTTCCCTGTGGGCTCCCACGTCCAGTATCGCTGTCTGCCAGGGTACAGCCTGGAAGGAGCAGCTGTGCTCACCTGCTACAGCCGGGACACAGGCACACCCAAGTGGAGTGATCGGGTCCCCAAATGCGCCT
Seq C2 exon
TAAAGTACGAGCCGTGCCTGAACCCCGGTGTTCCTGAGAATGGTTACCAAACTCTGTACAAGCATCACTACCAAGCGGGCGAGTCGCTACGCTTCTTCTGCTACGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACATGTGTACCCGGTCACCCCTCCCAGTGGACCAGCCAGCCCCCACTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683-'16-28,'16-26,19-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.046 C2=0.005
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=89.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCGAGCCTGGCTATGAA
R:
CCGGGTACACATGTGATGGTG
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types