GgaEX7009976 @ galGal4
Exon Skipping
Gene
ENSGALG00000026431 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:5912440-5913184:-
Coord C1 exon
chr19:5912990-5913184
Coord A exon
chr19:5912716-5912907
Coord C2 exon
chr19:5912440-5912637
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCTACAACCCGCAGTCA
3' ss Score
7.44
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
AGGTGCCCCGCAACGACACGTGCCCTGAGCTGCCTGACATCGCCAACGGCTGGAAGACCGCCTCGCAGCCTGAGCTGCTGCACGGCACCGTCGTCACCTTCCACTGCTACCCCGGCTTCGAGCTGGCTGGTGCCGACCTGCTCATGTGCCACTGGGACCTGACGTGGAGCGGCGACCTGCCATCATGCGAGCGGG
Seq A exon
TCACCACCTGCCGGGACCCCGGGGACGCCGAGCACAGCCGCAGGGTGGTCTCCAGCCCCAAATTCCCAGTGGGGTCCACCGTGCGCTTCGTCTGCGATAAGGGCTACGTGCTGGCGGGCGCCGGGCTCCTCACCTGCCACGACCGCGCATCGGGGGGACCCAAGTGGAGCGACCGCCTGCCCAAATGCATCC
Seq C2 exon
CGGAGGCGTACGAGCCATGCCACAACCCCGGCGTGCCCGCGGGCGGGCGGCAGAGCCCCGAGCGGCGGCTGTACCCGGCGGGCAGCACGCTGCGCTTCTCCTGCACCGCTGGGCGGGCGCTGCTGGGTGAGGGCAATCTGCGCTGCCTGCCCGGGCACCCCTCGCGCTGGAGCGGCTCGCCTCCCATCTGCAAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026431-'14-15,'14-12,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.092 C2=0.164
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=86.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTCACCTTCCACTGCTAC
R:
AGATTGCCCTCACCCAGCAG
Band lengths:
245-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]