MmuEX6087800 @ mm9
Exon Skipping
Gene
ENSMUSG00000000632 | Sez6
Description
seizure related gene 6 [Source:MGI Symbol;Acc:MGI:104745]
Coordinates
chr11:77788648-77790443:+
Coord C1 exon
chr11:77788648-77788842
Coord A exon
chr11:77789974-77790165
Coord C2 exon
chr11:77790246-77790443
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCTCTCCATCCGCAGTGA
3' ss Score
11.63
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AGGTTCCCCGCAACGACACATGTCCAGAGCTACCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTGCACGGCACGGTGGTCACCTATCAGTGCTACCCTGGTTACCAGGTGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACCTAAGCTGGAGTGAGGACCTGCCTTCATGCCAGAGAG
Seq A exon
TGACATCTTGCCATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCCCAAGTTTCCCGTGGGAGCAACTGTGCAATATGTCTGTGACCAGGGTTTTGTGCTGACGGGGAGTGCCATTCTCACCTGCCATGATCGGCAAGCAGGCAGTCCCAAGTGGAGTGACAGGGCCCCCAAGTGTCTCT
Seq C2 exon
TGGAACAATTCAAGCCGTGCCATGGCCTCAGCGCCCCGGAGAATGGTGCCCGCAGCCCTGAGAAGCGGCTTCACCCAGCAGGGGCCACCATCCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCGCATTGGAGTGACCCACCACCCATCTGTAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000632-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.015 C2=0.164
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=86.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAACCCATCACAGCCTG
R:
GCACAGGAGAAGTGGATGGTG
Band lengths:
250-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: