DreEX0065581 @ danRer10
Exon Skipping
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24590516-24597670:+
Coord C1 exon
chr15:24590516-24590710
Coord A exon
chr15:24595103-24595294
Coord C2 exon
chr15:24597476-24597670
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTATTTGTGTACTAGTGC
3' ss Score
6.29
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
AGGTTCCTCGTAACGACACATGTCCAGAGCTTCCAGAGATCTCAAATGGCTGGAAGACCACATCCCACCCTGACCTTGTGCATGGCACAGTCGTCACCTATCAGTGTTATCCTGGCTTCGAGGTGGTGGGCACCGAAATGTTGATGTGCCAATGGGATCTGACCTGGAGCGGAGACCTGCCCAGCTGTGAAAGAG
Seq A exon
TGCTGTCGTGTCCAGACCCGGGCACAGTAGAGCACAGTCGCAGGGTGATGTCGGGGCCGCGTCTCATCGTGGGCTCCACTGTCCAGTACATCTGTAACAAAGGCTACTCGCTGTCAGGAAACAGCCTCCTTTCTTGCTACCACAGAGACTCCACTGGCCCCAAGTGGAGCGAGAAACTGCCCAAATGCATCC
Seq C2 exon
CGGATTCGTTTGAGCCGTGCAGGAACCCTGGCACTCCGGCCTACACCATCCAGAGCTCTGAGAAGCACGTGTATCAGGCTGGAGAAACTGTACGCTTCTCCTGCATGAATGGGTACGAGCTCCAGGGCGAACCTGTTCTCCGTTGTGTCCCCGGGCATCCTTCCAAATGGAGTCATCCACCGCCGCTGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACATGTCCAGAGCTTCC
R:
CACGTGCTTCTCAGAGCTCTG
Band lengths:
253-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]