RnoEX6048636 @ rn6
Exon Skipping
Gene
ENSRNOG00000009350 | Sez6
Description
seizure related 6 homolog [Source:RGD Symbol;Acc:619780]
Coordinates
chr10:64867783-64869466:-
Coord C1 exon
chr10:64869272-64869466
Coord A exon
chr10:64868062-64868253
Coord C2 exon
chr10:64867783-64867980
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTTTTCCATTCGTAGTGA
3' ss Score
8.26
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
AGGTGCCCCGCAATGACACATGTCCAGAGCTTCCCGAGATCCCCAACGGCTGGAAGAACCCATCACAGCCTGAGCTGGTGCATGGCACGGTGGTCACCTATCAGTGCTACCCCGGTTACCAGGTGGTGGGATCCAGTATTCTCATGTGCCAGTGGGACCTGAGCTGGAGTGAGGACCTGCCCTCATGCCAGAGAG
Seq A exon
TGACATCCTGCCATGACCCAGGGGATGTGGAGCACAGCCGACGCCTCATATCCAGCCTCAAGTTTCCTGTGGGAGCAACTGTGCAGTATATCTGTGACCAGGGTTTTGTGCTCACGGGTAGCGCCATCCTTACTTGCCATGATCGTCAAGCGGGCAGTCCCAAGTGGAGTGACAGGGCCCCCAAGTGTCTCT
Seq C2 exon
TGGAACAGTTCAAACCATGTCATGGCCTCAGTGCCCCTGAGAATGGTGCCCGCAGCCCTGAGAAGAGGCTCCACCCAGCAGGGGCCACCATTCACTTCTCCTGTGCCCCTGGTTATGTGCTGAAGGGCCAGGCCAGCATCAAATGCGTGCCTGGACACCCCTCACATTGGAGTGATCCTCCACCCATCTGTAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009350-'23-18,'23-17,24-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=86.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAACCCATCACAGCCTG
R:
CAGGAGAAGTGAATGGTGGCC
Band lengths:
247-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]