BtaEX6085570 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20881200-20882253:-
Coord C1 exon
chr19:20882059-20882253
Coord A exon
chr19:20881482-20881673
Coord C2 exon
chr19:20881200-20881397
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTGTCACTCTCTACCCTCAGTGA
3' ss Score
8.95
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
AGGTGCCCCGTAATGACACCTGTCCGGAGCTACCTGAAATCCCCAATGGCTGGAAGAGCCCGTCGCAGCCTGAGCTGGTGCATGGCACCGTCGTCACCTACCAGTGCTACCCTGGCTACCAGGTGGTAGGCTCCAGTGTCCTCATGTGCCAGTGGGACCTCACCTGGAGTGAGGACCTGCCCTCATGCCAGAGAG
Seq A exon
TGACTTCCTGTCTCGACCCTGGGGATGTGGAACACAGCCGACGTCTCATATCGAGCCCTAAGTTCCCCGTGGGGGCCACTGTGCAGTATATCTGTGACCAGGGTTTTGTGCTGACGGGTAGTGCCCTCCTCACCTGCCATGACCGCCAAGCCAGCAGCCCCAAGTGGAGTGACCGGGCCCCCAAATGTCTCC
Seq C2 exon
TGGAACAGCTCAAACCGTGCCATGGCCTCAGCGCCCCCGAGAATGGTGCCCGCAGTCCCGAGAAGCGGCTGCACCCAGCGGGGGCTACTGTCCACTTCTCATGTGCCCCTGGCTATGTGCTGAAGGGCCAGGCCAGCATCAAGTGTGTGCCCGGACACCCCTCACATTGGAGTGACCCCCCGCCCATCTGTAGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979-'14-20,'14-19,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.179
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=86.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGCTCCAGTGTCCTCAT
R:
ACTCCAATGTGAGGGGTGTCC
Band lengths:
244-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]