RnoEX0079972 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198396594-198400494:+
Coord C1 exon
chr1:198396594-198396788
Coord A exon
chr1:198400015-198400206
Coord C2 exon
chr1:198400303-198400494
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTGTCCTGTCACCAGTCA
3' ss Score
8.17
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AGGTCCCGCGGAACGATACGTGCCCGGAACTGCCACCTCCTGAGTGGGGCTGGAGGACAGCATCCCACGGGGACCTTATCCGGGGCACCGTGCTCACTTACCAATGCGAGCCTGGCTACGAACTACTGGGATCAGACATCCTCACTTGCCAATGGGACCTGTCCTGGAGCGCGGCGCCACCTGCCTGCCAAAAGA
Seq A exon
TCATGACTTGTGCTGACCCTGGTGAGATCACTAATGGCCACCGGACTGCCTCAGATGCTGGTTTTCCTGTGGGCTCCCATGTCCAGTATCGATGTCTGCCAGGATACAGCCTAGAGGGGGCAGCTGTGCTCACCTGCTACAGCCGGGACACGGGCACACCCAAGTGGAGCGATCGGGTCCCCAAATGCGCCT
Seq C2 exon
TAAAGTACGAGCCATGCCTGAACCCCGGCGTTCCTGAGAATGGCTACCAGACATTGTACAAGCATCATTACCAAGCGGGGGAGTCACTACGCTTCTTCTGCTATGAGGGCTTTGAGCTCATCGGCGAGGTCACCATCACCTGTGTACCTGGGCACCCCTCCCAGTGGACAAGCCAGCCCCCACTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098-'18-29,'18-28,20-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.046 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=84.8)
A:
PF0008415=Sushi=WD(100=92.3)
C2:
PF0008415=Sushi=WD(100=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCACTTACCAATGCGAGC
R:
CCCAGGTACACAGGTGATGGT
Band lengths:
257-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]