MmuEX7005705 @ mm10
Exon Skipping
Gene
ENSMUSG00000072723 | Gm10044
Description
predicted gene 10044 [Source:MGI Symbol;Acc:MGI:3641749]
Coordinates
chr14:7766215-7774069:-
Coord C1 exon
chr14:7773858-7774069
Coord A exon
chr14:7771141-7771302
Coord C2 exon
chr14:7766215-7766248
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTTTTATGATTCTCTTAAAGGAG
3' ss Score
7.31
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCCTCCGCTGCTGCTGCTGCTGCGGCAGCTGCTTCTGCTGTGGCCTCCTCCAACGCTACTGTTAATGCTGTGGTGGCTGCTGCTGTCACTGCTGCTTTCGCAGCGGTTACTGCTACTGCTGACATCAAAGGCAGTGAACCAACTCCTCAAAGGCACAGTGGGGCTACTAATGACAAGGATTTCGCACTTAAGGCAAAAGAAGAACATGATAA
Seq A exon
GAGAGAACCTGCCACACATTTGATGAAAATGAACAGAAGTGAAAATAAAGGCTATTTTCCGGGAGATTCCATGGCAACGTTTGAGAAGTGTGCTGCAGACACAAGTGCTGAGCCACCAGTGAAGCAGAGCTGTGCTCGCCAACTCCATCAGGACGGACAAAG
Seq C2 exon
CCCTGCAAAGAGCACATCTAAAGAAAAGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072723-'9-9,'9-8,12-9=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGCAGCTGCTTCTG
R:
TCGTGCTTTTCTTTAGATGTGCTCT
Band lengths:
226-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types