RnoEX0001682 @ rn6
Exon Skipping
Gene
ENSRNOG00000057837 | AABR07017236.2
Description
NA
Coordinates
chr15:18939090-18949325:+
Coord C1 exon
chr15:18939090-18939190
Coord A exon
chr15:18941409-18941570
Coord C2 exon
chr15:18949292-18949325
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTTTTATGACTCTCTTAAAGGAG
3' ss Score
6.61
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GCTACTGCTGAACACAAAGGCGATGAACCAATTCCTCAAAGGCACAGTGGGGCTACTAACGACAGGGATTTTGTTCTTAAGGAAAAAGAAGAACAGGATAA
Seq A exon
GAGTGAACCTGCCACACATTTGATGGAAATAAACAGAAGTGAAAATAAAAACTCTTTTCCTGGAGATTCTATGCCAACATTTGAGACGTGTACTGCAGACACAAGTGCTATGCTACAGGTGAAGCAGAGCTGCGCTCGTGAACTACATCAGGACGATCGAAG
Seq C2 exon
GTATGCAAAGAACACATCTAAAGAAAAGCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057837-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.766 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTGAACACAAAGGCGAT
R:
CTCGTGCTTTTCTTTAGATGTGT
Band lengths:
132-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]