RnoEX0001683 @ rn6
Exon Skipping
Gene
ENSRNOG00000057837 | AABR07017236.2
Description
NA
Coordinates
chr15:18941431-18950667:+
Coord C1 exon
chr15:18941431-18941570
Coord A exon
chr15:18949292-18949325
Coord C2 exon
chr15:18950595-18950667
Length
34 bp
Sequences
Splice sites
3' ss Seq
GTGTTTCTTTACTTTTTAAGGTA
3' ss Score
10.87
5' ss Seq
GAGGTACCT
5' ss Score
7.63
Exon sequences
Seq C1 exon
ATGGAAATAAACAGAAGTGAAAATAAAAACTCTTTTCCTGGAGATTCTATGCCAACATTTGAGACGTGTACTGCAGACACAAGTGCTATGCTACAGGTGAAGCAGAGCTGCGCTCGTGAACTACATCAGGACGATCGAAG
Seq A exon
GTATGCAAAGAACACATCTAAAGAAAAGCACGAG
Seq C2 exon
GTCAAGAAGCTAAAAAATTTTGGGGAAGGCCTGGAGGACGGGACTCTGCCATGTGAAGCGGCCTCAGATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057837-'1-2,'1-1,4-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=1.000 C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAGGTGAAGCAGAGCTG
R:
CATCTGAGGCCGCTTCACATG
Band lengths:
121-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]