MmuEX7006810 @ mm10
Exon Skipping
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67208853-67210464:+
Coord C1 exon
chr11:67208853-67209165
Coord A exon
chr11:67209257-67209333
Coord C2 exon
chr11:67210377-67210464
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCTTTCTCCCCCAGAGT
3' ss Score
11.47
5' ss Seq
AGGGTACCA
5' ss Score
2.81
Exon sequences
Seq C1 exon
CCGATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCTAAGGCGACAGACACCTCCTTCAAGAACAAGCTGTATGAGCAGCATCTTGGAAAGTCCAACAACTTCCAAAAGCCCAAACCTGCCAAAGGCAAGGTTGAAGCTCACTTCTCCCTGGTGCACTATGCGGGCACTGTGGACTACAACATCGCTGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGAGACTGTGGTGGGGCTGTACCAGAAGTCTTCAATGAAAACTCTGGCTTACCTCTTCTCTGGGGCAGCAGCAGCTGCGGAAGCAG
Seq A exon
AGTCTGGTGGCGGTGGTGGAAAGAAAGGGGCCAAGAAGAAGGGTTCCTCCTTCCAGACCGTGTCAGCCCTCTTCAGG
Seq C2 exon
GAGAATCTGAATAAGCTAATGACCAATCTGAGGAGCACTCACCCCCACTTTGTACGGTGCATCATCCCCAATGAAACCAAGACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-'19-28,'19-18,22-28=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.462 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.2=100)
A:
PF0006316=Myosin_head=FE(3.6=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAACAAGGACCCCCTGA
R:
TTCATTGGGGATGATGCACCG
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types