MmuINT0004440 @ mm10
Intron Retention
Gene
ENSMUSG00000070883 | Ccdc173
Description
coiled-coil domain containing 173 [Source:MGI Symbol;Acc:MGI:1923100]
Coordinates
chr2:69787160-69789575:-
Coord C1 exon
chr2:69789415-69789575
Coord A exon
chr2:69787387-69789414
Coord C2 exon
chr2:69787160-69787386
Length
2028 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TATGTTTCTTAATGCATTAGGAA
3' ss Score
5.8
Exon sequences
Seq C1 exon
ACTTCCGGCGTGGTTGCTAAACAACCAAATGGTTTAGTTATCGCTCAGTAGCTGACTTCAGCTTGGAAGTAGTATCACCTGCTCTGGACTCGCGGGATCAGCTTTGTTAAAGATGCAGGTGCGCTTTGGACGGCGCTCCGGGCAGGCGAAGGAAAGCCAAG
Seq A exon
GTGAGCTGCCTTGGCCCGTGCCGGAGCTGGGGTTGTTGTTTCTAGAACCCCAGCATAGGGTGACAAAGTGAGGGCTTCGGTTGCCTTTTGAAATGGGCTTTAACCAAGTCGAAAGCAGTCCCAGCAAGCATCCTTGGAAGTTAGGCAGGTTGGCCTTCAGGTGAATGAGTGGAAAAAGGAAAGAGGACTAGGGGAGCGTAGCAGTAGAAAGAATAGACTAGGAGTAGAATAGGGGTAGAAAAGGCAGCAGTTAGAGCCTTACCCCAGCTGTAACTCGTCAGACACTCGGGGCACTTAAGCTTTGTAATTCGTTGAATAAATTTTGGAATGCCGTTTGGAAATGTTATTGACCTATCAAAATCTTTATAATGTTGCAGACCTGCTGAGTAATCTTTTCTAAAGCTCACGGAAAAACCTCAGTTCTTTCCACGCTAAAGTTAAAATTCTCCCCTAGTCAAATGCTTTGATAATGTAAAAAAAAAAAAAAAAATGATAATGAGGTAATTAAAGTGACCAATTAAAGTGACCTAAGATTTGATTTTTTTTCAAAGATGTGAGCAAGTAGGACTTCTAAAAACAAAGTCTTTCCACAAGTTTAATTGTTGTCATGGTAACTAATAGATTCTTGGAAATTTGAACTATCTTCACGTTTTGCTTGAGTTCTGTAGCAATAGCACCCTACCCCCACCCTGCACCCTAGGATAGACACAATCTGGTCAGTGGGAACATTAGGAAATTTGATTCATACACAAGGACATTGTAAAAGTAATTTTTATTCACCAGATGTAACTGTTGTCTTGGAGGCTTACTGCTGAATAAGCTCACCCTTTCTAGTTCTTTCTGAACTCTGGCCTCGATGGTTCAACACAGGTGTTCTGGCCCAAACTCCTCTGCAAGCTGACTGATTCAAACTGGCTTCTCTCAGCCTCTTTCTGAATTGCTCCACTTGGAAAAACTGCTGTGTATTGAGGAGAGATGCTTTCGAACAGTGGTTCTCAATCTCCCTAGTGCTGTGACCCTTTATTACATACAGTTCCTTATGTTGTGGCGACCCGCACCATAAAATTATTTTCTGTGCTACTTCATGATTATAATTGTATGAATTATGCTTAAATTATTATTATTAAATATCTGTGTTTCCCAGTGGTCTTAGGCGACCCTCATTCGACCCCCAAAGGTGCTGAGATGCACAGACTGAGAAACTGCTGCTTTAGAGGAAGCGTGCAGTCTGAAACGCTGGGGAAAGCTCACAGTGTTAAGGAAAGCATGCTAAGGAGAGAGAAGAAAAGGAGAATACACTCCTCTGATCAGTTCAGAAGAGTGAAGAGACTTAACATGTTACATGTTAACATGTTAACATGTTACATGGCTGTGCCCCATAAGGTTCTGCATTGGGGCAGGGATTCTGGGAAAGAGCATAAAGCAATAAAATCACGTATATGACAACATGAATGAATCTCAAAGTAATTCTTTTGAGTAAAATCTATAATAAAAGTAGTAGATGAGTGGTGGCCTAGTAGAGCCTAAGGAGGGATGGCAAGCAGTAAATGGGTGTGGGGACTGTTGGTGTCCTGTGGCCGTTATCTGAACTGTAATGATGGCTTTGGAGGCATATACTTATCAAATTTAATGAAATGGGTCTTATAAAAGAGCTAATTCTGCCTATCTCATTAGCATGACTCGAGGAGTTCTAGGATGGACCCTGAGAAAACGTGATTGAATCCCAACCCCACCAGCATGTTTGATCTCCACCCAGGCCGTAGACCTCACTCTCTTGATCAGGAGTTTTTCCACCAAGATCCCACAAAGTTCAATGTCTTGCCCAAGTTTACAAATGAAGGAAATCACCAAAGATTTGATCACTTCACTCTGATTTCATAAAGTCTCGTATTATCTCCCTCAGCCAATCTTAAGTTACACATTTGAGGCAATTTTCAGATACTACTATACTCCAGAAATTTCTGGAAAAAAAAGTCAGGTGAACTCTTCCTGAAAAGTATTTAAAAATTATGTTTCTTAATGCATTAG
Seq C2 exon
GAATGGATTGCTTTGAAAAAGAAGAGATTCCCTATCCACCCCTCCTACCTAGCAAGGTGGATCTCCAGCAGATCACCATAATCCCACACGCTGAGTGGGAGAGGATCCGGGATAGCCTCAACAGGTTGACAAGAGAAGCAGCAGTCCTTCGTGCAGAAAGAGCAGCAAAGAAGAAAATGCATGTGAAATCCCAAGAGTTGGTAAAACACTGGACTAACACATATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070883:ENSMUST00000094942:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=NA C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types