MmuINT0005071 @ mm10
Intron Retention
Gene
ENSMUSG00000036770 | Stpg3
Description
sperm tail PG rich repeat containing 3 [Source:MGI Symbol;Acc:MGI:1921722]
Coordinates
chr2:25214008-25214396:-
Coord C1 exon
chr2:25214236-25214396
Coord A exon
chr2:25214143-25214235
Coord C2 exon
chr2:25214008-25214142
Length
93 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
GAGCTTGCCTTTTGCATCAGGGC
3' ss Score
5.46
Exon sequences
Seq C1 exon
GCCCAGTGCTGCTGCTGTGTTATGGTGGGACCAGGAGCTGGAGACTGCCTGGGATGAGATGTGGCACCCAAAGATGAAGAGATCCTCAAGTGGCTTCAGGTTAAGAATAGGCGCCCCCAATGAGTCCACACCTATCAGCACAGGGACTCTGAGAGAGCTGT
Seq A exon
GTGAGTGAGGGTCTTCACTCCCCAGGCCAAAATGGGGGCTGGGGAAATAGCTTTCTGCGAAGAAATGGGTCAAGAGCTTGCCTTTTGCATCAG
Seq C2 exon
GGCTCGAGAGACGTCCTCCAATCCTGATGGACCTGGATGTCCCTGGCCCAGCCCAGTACGAGGTGCCCAATATGTCTCTGCGAGAGGCCTCTCCACACCCCCAATACACCATCGGTCGCAAGTACCCGGTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036770:ENSMUST00000114363:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.489
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGTGTTATGGTGGGACC
R:
GGATTGGAGGACGTCTCTCGA
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types