MmuINT0007686 @ mm9
Intron Retention
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:127455675-127456217:+
Coord C1 exon
chr7:127455675-127455800
Coord A exon
chr7:127455801-127456022
Coord C2 exon
chr7:127456023-127456217
Length
222 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTGTTTTCTTTGTTTTTAAGATA
3' ss Score
9.8
Exon sequences
Seq C1 exon
GCTAGAATGTCTGAGGAGTTATCTGGATACTCAGAAGAGGAAGATGTACAAAATGAAAGAGAGACTATCCTGAACCATCCTTGGCGCTCACTAAATTCTACTGTGCTCATTAAAGAGCTCATAAAG
Seq A exon
GTAAATGTCCTTCAATGGCCAGCATATGGCTTCATTCCCTAAGATAAGTCCTGATAGCTCATGGTGAACCTGTGGATCTATGGCTAGTAGATCCCAAAGTATGGGATGTAGAGTTCTTGTGAACCTGTCTGAAGCATTTCTGTCTGTAAAGGTTTGAAACTTTGTGTTTGAACCATCCAATTACACATTTTGCATGTATTTTGTGTTTTCTTTGTTTTTAAG
Seq C2 exon
ATATATTTTAAAATTCCACCTACTCTGGCTGTGAGAAATATCTCTGTCGCCATTCAAAAGGAGGAGTGCTTTGGACTGCTGGGATTAAATGGAGCTGGGAAAACCACTACCTTTAAAATTCTGACTGGAGAAGAGATAGCTACCTCTGGGGATGTGTTCATTGAAGGCTACAGCATCACCAGAAATATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017-Abca14:NM_026458:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(37.2=83.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAATGTCTGAGGAGTTATCTGG
R:
CTGGTGATGCTGTAGCCTTCA
Band lengths:
308-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: