MmuINT0007686 @ mm10
Intron Retention
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:120312161-120312703:+
Coord C1 exon
chr7:120312161-120312286
Coord A exon
chr7:120312287-120312508
Coord C2 exon
chr7:120312509-120312703
Length
222 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTGTTTTCTTTGTTTTTAAGATA
3' ss Score
9.8
Exon sequences
Seq C1 exon
GCTAGAATGTCTGAGGAGTTATCTGGATACTCAGAAGAGGAAGATGTACAAAATGAAAGAGAGACTATCCTGAACCATCCTTGGCGCTCACTAAATTCTACTGTGCTCATTAAAGAGCTCATAAAG
Seq A exon
GTAAATGTCCTTCAATGGCCAGCATATGGCTTCATTCCCTAAGATAAGTCCTGATAGCTCATGGTGAACCTGTGGATCTATGGCTAGTAGATCCCAAAGTATGGGATGTAGAGTTCTTGTGAACCTGTCTGAAGCATTTCTGTCTGTAAAGGTTTGAAACTTTGTGTTTGAACCATCCAATTACACATTTTGCATGTATTTTGTGTTTTCTTTGTTTTTAAG
Seq C2 exon
ATATATTTTAAAATTCCACCTACTCTGGCTGTGAGAAATATCTCTGTCGCCATTCAAAAGGAGGAGTGCTTTGGACTGCTGGGATTAAATGGAGCTGGGAAAACCACTACCTTTAAAATTCTGACTGGAGAAGAGATAGCTACCTCTGGGGATGTGTTCATTGAAGGCTACAGCATCACCAGAAATATTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017:ENSMUST00000084640:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(37.2=83.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAGAATGTCTGAGGAGTTATCTGG
R:
CTGGTGATGCTGTAGCCTTCA
Band lengths:
308-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types