GgaINT0016432 @ galGal4
Intron Retention
Gene
ENSGALG00000001967 | ABCA3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:HGNC Symbol;Acc:HGNC:33]
Coordinates
chr14:13571299-13571746:-
Coord C1 exon
chr14:13571612-13571746
Coord A exon
chr14:13571494-13571611
Coord C2 exon
chr14:13571299-13571493
Length
118 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCACCCCTTGCCATCCCCAGGTC
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTGGCACTGCTGAACAGCGTGTCTGTGCTGCCTGAGGACCGGGACGTGGCAGATGAGAGGAAGAAGGTTTTGGAGTCGCCACCGGAGCTGCTGTCATCACTGAGCAGCCCTCTGGTCATCAAGGAGCTCACTAAG
Seq A exon
GTGAGGAGCACATGGCCCTTCTGGGGCACCTTGCTGCAAGCACAGCCTGCTGCCTTGCTGTGCCCTCGGATGCCTTGCATGTGATGTGAGCAGCGTGCTCACCCCTTGCCATCCCCAG
Seq C2 exon
GTCTATGACAGCCGGGAATCCCTGCTGGCAGTGGACAGGATCTCTTTGGCAGTCAGCAAAGGGGAATGCTTTGGCCTTCTTGGCTTCAATGGAGCGGGCAAAACCACCACGTTCAAGATGCTGACGGGTGATGAGAGCATCACGTCGGGGGATGCCTTTGTGGATGGCCACAGCATTCTGGCCAACATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967:ENSGALT00000003054:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(37.2=83.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGCTGTCATCACTGAG
R:
TGATGTTGGCCAGAATGCTGT
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]