RnoINT0010075 @ rn6
Intron Retention
Gene
ENSRNOG00000043296 | Abca14
Description
ATP-binding cassette, subfamily A (ABC1), member 14 [Source:RGD Symbol;Acc:1561491]
Coordinates
chr1:190059005-190059538:+
Coord C1 exon
chr1:190059005-190059130
Coord A exon
chr1:190059131-190059343
Coord C2 exon
chr1:190059344-190059538
Length
213 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GTGTTTTCATTGTTTTTAAGATA
3' ss Score
8.95
Exon sequences
Seq C1 exon
GCTAGAATGTCCAAGGAGTTATCCGGAGACTCAGAAGACGAAGATGTACAAAATGAAAGAGAGACTATCCTGCAGCATTCTTGGCACTCACTGAATTCTACTGTGCTCATTAAAAAACTCATAAAG
Seq A exon
GTAAACGCCCTTCAGTGTCCAGCAGATAACTTCATTCCCTAAGATGAGCACTGGGAGCTCATGGTGGACTTGTGGAGCTATGGCTAGTAGATCCCCAAGTACGGGCGGTAGGGTTCTTGTGAATCTGTCTGAAGCATTGCTGTCTGTAAAGGTTTGAAACTTTGTGTTCGACCAATACATTTTCATGTATTTTGTGTTTTCATTGTTTTTAAG
Seq C2 exon
ATATATTTTAAAATTCCACCAACTCTGGCTGTGAGAAATATCTCTCTCACCATTCAAAAGGAGGAATGCTTTGGATTACTTGGGTTAAATGGAGCTGGGAAAACTACTACCTTTAAAATTCTGACTGGAGAAGAGATAGCTACCTCTGGGGATGTGTTCATTGAAGGTTACAGCATCACTAGAAATATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043296:ENSRNOT00000055063:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000522=ABC_tran=PU(37.2=83.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGGAGACTCAGAAGACGA
R:
ATTTCTAGTGATGCTGTAACCTTCA
Band lengths:
292-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]