MmuINT0007709 @ mm9
Intron Retention
Gene
ENSMUSG00000054746 | Abca15
Description
ATP-binding cassette, sub-family A (ABC1), member 15 [Source:MGI Symbol;Acc:MGI:2388709]
Coordinates
chr7:127518379-127526020:+
Coord C1 exon
chr7:127518379-127518670
Coord A exon
chr7:127518671-127525773
Coord C2 exon
chr7:127525774-127526020
Length
7103 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTATTGTGTCTTTGTCCTAGGTG
3' ss Score
10.23
Exon sequences
Seq C1 exon
TGTTCCCTCTACCTGCAGCAGTTCCGTGCCATGTTCATGAAGAGGCTGATGTACAACTGGCGAAACTGGAGAGGGATTTTGGTGCAGATACTGGGGCTTATCATTTCTACTTTCTTACTCCTCAAGTCTCATGAGTTTAGATATAAGAAAATTAGGCAAATGAATTTGGACGAATATGGTCAAACCATTGTGCCTTTTTCTATTTGGGGGAAATCTAACTTGACATCAAGTCTTTTAACACACCTTGAGAATATGCTAAAACCTGGCAACCACCAACTCAAGGAAGTACAAG
Seq A exon
GTAAGGCTAACTTAGAAACAAAAAGTTGCCTCTTCATTGATTTCCTTGGGTCACTCCCAAACATAGGTATAACTATAACATGGTAACTTGCTCCATTCTTTTTCTGACACTCATTATACCAGAGACAGTTAAGCAATAGCAATGTCCTAATTAAAGCTACTGGTATTAAAAGTTAACTGGTATTGGTTGCACTTTGGCTGTGAGCAGTTGGTATTCCTTTCTAGTTCAACACATGTAATAATAACAATAATAACAACAATAACAATAAAAAATAATAATAATATGAGGTACCCACGTTTGTTATACTTTTACACTTTGGGCACAATGCAGCACATGAAATACAGCATGGAACTATGGCTTCCAGTACTGAACTCCAGGTGTTGGTTTGATTGTTTGTTTGTTTGTTTGTTTGTTTTTAGTGATAATGTCTAAAACAAGAATCTTGAAGACTTTCAGGGCAGGCTACTAAGAATACATTTTCAAAGATAGCAATAAAGTTTACATTTGTTATACTGAGTACTTGGCCTGTATGCCATTTAAATTGAACAATTACCATACTTGGTAGATATTTTTACTACTTTTACAAATAAGCCTTAGTGACATTTAAAGAAGTCAAATGTTTTGACTCAAATCAGACAGAAACTGCAGACTTGGATTTAACCTGATCTGCCTTGTGTCTACAAACCACTCAGTATAACACACTACATTTCAGAACATAAGCCATGTTCTCTCTCTTATATAATCATTTCTTCCCAGATTGGGTAATATGTTTTCATTGCCTGGTGGGTATTGTTCCTTTGGGGCTTGTCCTGTGCATAGCTGTAGGATAGGGAAGCTTAGTTTGTTTTCTCTCTTCTTCAGGTTTTGGTGTGAAGGATGAAAATATGTTTAAGAATATTAACTGTTCCTTAAAGACATGATCTCAGTGGAACTAGCTTGTAAATAATAGATTGGCTGATTACAATAAATTATCCCACAATGATAGATGAGCTGACCTGGTATGGTCTTCTAATTCCAGTTATCTGGAAGGAGGATCACAAATTCAAGGCCAGCCTGAGCTAGAGTGAGACTCAGATAAGGCTTATGATTTAGGTCAGTGGAACAGAACTTGTATGATATGCAAGAGGCCCTGCATCCAAACTCCTCTCTCTTCCTAGATAGATAGATAGATAGACAGATAGATAGATAGATAGATAGGTAGATAGATAGATAGATAGATGAGACATAGATAGACATAGATAGACATACATAGATAGAGAGAGATAGAGAGATAGATAGAGATAGAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGATAGAGAGATAGAGAGATAGAGAGATAGAGAGATAGAGAGATAGAGAGATAGAGAGATAGATAGATGTGACTAAATAAAAAGCAGTATCTTGACTCATAAGAAGATTGTTTAGATTGAAGCTTTGCTCACTAAAACATTAAATGAGTAACTGAATATGCATTTTTGTTATTAAGAACAGGGGCAGAAGTGCAATAGAATGATATAACAGACCCGCCATTGTCACCTGTCTTTAATATATGTTATTTTCTGTTTGTTTACTGAAACTTAGTCACATACACAGAGATATATTTATCCTTTCTCAACCCAACTGTTTTAGAAAACTGAACACATAAAATTTTAACTATTTGTTCTAATCATTTTAGCCATGACTATGTTTTATTAATTTTTGTATTGTCTCTATTTCAAACTGTGGACCTTCATTAAAATGTGCTGTTTAGGGTAAAGAATTGGCATTAAATTCTTTAGAACTTGTTCTCTCTTTGCTGTAGACAGTAGAAAAAAAGTTTTCCAGTAGGGAAATAGGTTTCTAGATAATTTTGCATCTGTTCTTTTATCCCCAAATGATCTATGCTTTAGCAACCCTATAAAGTTTTTTCAATTTTTTAGAATTTTTATATATACATACAATAAAATGTAAAAATACATACCACCTATTTCCCCCTTCAATTACTCCCATAGTCCCCTAACATGTTTCTCTCACAATGGTTTTGTTTATAGCCCACTAAACCAATTAGTGTTTTCCATGTATGCATGGGTGGGACCATCTAGTGGAGCCTAGAAAGCCTACCAGTGGCCATACACACAAAATTTAATTTTCTAACCCCTAGAAATTATTAACTGCCAAAAGCTCCTCTGTAAAGGATGAGGTTCTGAGGAGCATTTGTTTCCTCTATGTTAGGATTCTGACTGGCTTGATTTTGTGATGGTCTTATGCAGGCAAACCACAGCTGCTGTGTGTTCATGGGTACCATAGTCACATCATGTCCAAAAGACAGTGTTTCTCCTTCTGTTGTGTCCGGCCAGCAGACCACAGCCTGGGTTCTAGCCTGGAAAGGCATTTTGGAAACCTGGAAGAGAAGAGGGGCTAGGTGGCGAGATAAAGAAATGTAGCTAAGACAGTCATTCTGATCAAAGCTCAATTTTATTGTTCCGCACGCAATTATAAAGCAGGGGAAGGGGGCCCGATTCACCGCCAATTAGTCTTGGGATCCAATAGCAGGGTGACCACGTGCACGGCTCTGAACAGCAAAGCGGCAGGTTCCAGCAGTGGGCATGGCAGAACAAATGAGCAGGAAGCTCCACCCCTGAGCAAGCAGGTTTCAGGCTGGGGGAGGGGAGACTACATCCTTCCTCTGGCATTCACATTCTTTCTGTCTTCTCTTCTGAGATGTTTTCTGAGACATGGTTAGAGAGTTAGTAATCCCACTTAGGTCTGAGAACCCAGTCTCTTAGTCTCAGAACAATTACCAGCTAGGCATCTCTCCATTGACTTGTGTCCATTGCAAAAAGAGGCTTCTCCAGCCAAGGTTGAATGACATCATGCCTATTGGTATAAATATGGATATTTAAACACCAATTTGACAGTATGACCACTTAGCAAAATAACAACAGCAGGTTTTATCCTAGGCCTATAACCTCCCTCTCCATGGGCTTTGACCAGTAATTCAGTACCATGCATGAAATTTCCTCCTGTGGAGCAGATCTCAGATCTAATCATAAGGTGATTAGTTAGCCTATAACAATCGTGCCTCAGTTGTACCAGTGGTTATATCTTCCCTGGTCCATTTAACATATGCACTGATAGCTTTTTTTTTCCTCCATCAGTCTCTACAACATCTTCCAGCACTATGAAGGCTAGCCGGTGGGGAGGAGGTTTCCTAGACCATTAGTGACTAATTTTTCTCTGTCCTGTAGCAAAATGTGTAGTATCTTCAGTGATAGGGTCTTATTGTGATATTACTGTGGGTAATGTTCTGGCAGTAGCCTGTGTTGTTTCGGAGACCGCGGAGGCCTCTCTGAATGGTAACTGAGACTTTTACCTCCTGTCAAATCTGAGAGCAATGCAGTACTGTAAACTCTTTATGTTGCACCACAAATTGAGTGAATGTGAGCTCTGGAAAGGTTTCTAGCACCACAGAAACACATAAAGAATCTCCTGCCTTCACGGAATGAAACTGCCTCCCCTTCATTTATTTAGAAGTATGCCTCAGTTATGGGCTTCATCACCAAATTACAACTGTGCATTATTCATCTCCTCTCAACAGAAATTATGGGGAGATGAGAACCTTCTTTATATCTCTAGCCCCTAGCCCAGTTCCTGTCACATAACAAACACACAGTTTAATATAACCTCATATGAGAGGTGGAGAAAACAATGGACAAGGGAGAGACAGCAGTCAAGTCAGCTGCAGCATTACAGTGGCAGCCTAGGCAAGGGAACGAGCATAACAGGGCAAAGAGGGTATGTTCAAAAGACACATCTTGAGTGGACTACGTAGACTTTATTTTCTCAATTTGTGTGGAGGAAAGTCAGAATGGTACCATTTGGCTGTGTTGTTTTGTGGTTTATGTAGATTTACAAAACATTAAGAGGCCTCAGCACTGGTGGTAACCTCCATCAAAACTATAATATGAAAATGGAATCAGTCAAACAAAATAGTTAACATATGGAACATTTCCACCCACTTTTCCCTCCTATTGCCTTTACTACCACACAAACTTGCTATCTATTTCTGTCTTTATCCCTGGAAATTGCTAGTCTCTATTCTGTATTTGTAAGATTGATAATTCCAAGAGTGGTATAAAATGGAGTCACACAGTGTGTGACATTTTGGAATGAACATTTCACTTAGTGTGGTTTTCTGATAATTGTGTGTATCCAGTGTTGTTCTCTTTAATTGCTAACTACTACTGTATCACATGGGGATGCCACAGTTTGTGTAACTACTCACTCATTAAAAGACAGCTGCAGTTTTCCTGGCAAGCACAGCGTGAGTACAGCTGCTGTTTTTAATGTGAGTGTGCATCTTCAAGACAATGTAAATTCAGAGGTATTCAGTTTCACTAGTATTCTAGCTAGTGTTCCTTTAACTTATCTCATTCCACATTCTTATATGATAACTGCATGTATAATTCTATGAGAAACCAGCTGCTTTTCCATGTACTCTGCAGTTTTACATTTCCAACAAGCAACGTGTAACTGACCCAGTTCCTCTGTACCTTAAACTCTTTTCTCCAGAGGTTTACCTGAGTGTGTAATTTTGGCTAGCCTATTGGTATTGTGTGTAACATTTATTTTTATATATTGAGTCAGCCTTATATCTTTGAGATAGATTCCACTTCTTAAGGTGCATAATTCTTTATATGTTAATGCTTATATTTTTTTGGTGGTAAAGTAATTCTAGCTTGTAGAATAGATTAAGTGGATTGTGGAATAGAAGACACGTGATTTAAAACTAACAATAATGAAGTACTATTACAAATGAGGCTACACACACCTCATGGTTCATTTAATGTCAGTTTGATTGGGTTAAGGAATGAGCCCATAACTGTTAAAACACATTTGCAAGTGTTCCTATCAGGTTATTTCCAGGATAGATAAGTGTTGCAATCAATAGACACAGTGAAATGATTTGCAAGCTGAAACCCATGTGAATGGGCATCCTTCAACCCACTGCAGGGCTGAGTAGAAGCTTATTGGACAGAGGCTGGATTTGTATAAGGCTTAGTCTGTCACTTCCTCACTGCTGGACAGGGTATGATGGTCTTATGCTTCACTGAAATCCTGGAGACTTGCAGGGATTTCCCACCACTTAGAAGGGAACAAAATGTTGGGCTTCCCTCAATGCTTTTGTTCCTCTCAGGATCTTGACCAAAAAAAAATGTTGGTGCTTTGCAGCTCTGAAATACTCAAAAAAGGAGCCCAGGGAATCCTGTGGACGGTGAGATAGAGGGATTGTAGGACTTGGAGGGGATGAGAACAGCACAAGAGCACGGCCCACAGAATCAACGAACCGAAGCTTACAGGGGCCCACAGAGACTGAACTGACAACCAGGGAGCCTGTGTAGGTCTGACTTAGGTCCTCTGCATATATTTTATGGTTGTATAGCTTGGTATTCTTGTGGGAGTCTTTTGTTTGTTTGTTTTGTTTTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGACGTGTGCCACCACAGCGGGATTGATGCTGTCTCTGATTCTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTATACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTTCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTACTCCATTGGGGGCCCTGTGATCCATCTAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCAGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGTTCATCCTTTCATCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTTTTCTTGAGTTTCATGTGTTTAGGAAATTGTATCTTATATCTTGGGTATCCTAGGTTTTGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCAGATCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGCTGTCTCTGATTCTTTTGCATGCTTTTAAAACCACCTTCCTCCTTCTGGGTTGCTTCATCCAGCCTTGGTATAAGGGTTTGTGCCTAGTCTTAATGAAACTTATGCCACGTTTGGTTGATATCCCTGGGAGGCCTGCTCTTTTCTGGAGGGAAACAGAAGAGGAGTAGATCTGGGAGTGAAAAGAAGTGAAGAAGAGACACTAGGAAGAGAGGGGGAGGGAAACTGCTGTCTGGATGTAATATATGAGAGAAGAAAAAAGAAAAACAAGAAAAAAGCTCAAAAATAAAGAGCAATTTTAGGGAATAAAAATAACATTTACTAAGTTTTTTTTAGTTTTTTGATTTTATCTGAGGGGAGTTTAGTAAACTCTGCAATGTGAATTAAATTTCTTACCAATCTGTTAAAGAGAGGTAGTTGAGTTGAAGGGTGTTTTCTCAGCAAAATTGTAGTTTGGGTTATGGTAAATACAATGAGAAAGCCCAGACTTTAATGATAGAATAAGCCCCAAGGGTAACAGCTAATGTTTGAAAGAATTATCTCAGCAAGTTTGGAAGTGGTGAGAAACTTGGCTTGATTATTAGACCTTGGATGACAGAGTTTGTCGTGAGCAGCATGTTAGATTTACTGACAAGTATTGTGTCTTTGTCCTAG
Seq C2 exon
GTGACCTACTCAAATATTTGGAGGGAAATGACGAATGCGTTCATTTATGTGTTATCGCACTTTCTATCAAGGTGGTTGCAAATAGAGTAAACCTTACTGTTCTGTTCAACAATGAAGCCTACCATTCACCATCTCTATCCCTGACAGTTTTAGACAACATTCTTTTCATGTCACTTTCTGGTTCTGATGCTTCCATAACAGTCTTCAATAAACCTCAGCCAAGCCCCCAGAGGAAAGAATGGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054746-Abca15:NM_177213:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(21.6=88.8)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: