MmuINT0007827 @ mm9
Intron Retention
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25302498-25302920:+
Coord C1 exon
chr2:25302498-25302635
Coord A exon
chr2:25302636-25302719
Coord C2 exon
chr2:25302720-25302920
Length
84 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
CCCCGCCCACCTGTCCCCAGGTG
3' ss Score
11.7
Exon sequences
Seq C1 exon
GAAAGACACCATACGAAGGTGCAGTATCAGCTCAAGTCAGAGCACATCTCGCTGGCTCAGGTGTTCAGCAAGATGGAGCAGGTGGTGGGTGTGCTGGGCATCGAGGATTACTCAGTCAGCCAGACCACCCTGGATAAC
Seq A exon
GTGAGTGTGCTGCGTGGAGTTGGGGTGTGCCCTCTTGGATTTGCCTGCACCACTCACCGGCGGGCCCCGCCCACCTGTCCCCAG
Seq C2 exon
GTGTTTGTGAACTTTGCGAAGAAGCAGAGTGATAATGTGGAGCAGCAAGAGGCTGAGCCCTCGTCCTTGCCGTCCCCCCTTGGACTGCTCAGCCTGCTGAGGCCCCGCCCCGCACCCACAGAGCTCCGGGCATTGGTGGCTGATGAGCCAGAGGACCTGGACACAGAGGATGAAGGCCTCATCAGCTTCGAGGAAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-Abca2:NM_007379:46
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.507
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGTGCAGTATCAGCTCA
R:
GCCTCTTGCTGCTCCACATTA
Band lengths:
178-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: