DreINT0023632 @ danRer10
Intron Retention
Gene
ENSDARG00000013500 | abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-1]
Coordinates
chr5:24587698-24590504:-
Coord C1 exon
chr5:24590367-24590504
Coord A exon
chr5:24587908-24590366
Coord C2 exon
chr5:24587698-24587907
Length
2459 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TATTCTCTACTTCTTTTTAGGTC
3' ss Score
10.11
Exon sequences
Seq C1 exon
GAGCGACACCACACAAAGATTCAGTACCAGCTGAAGTCAGAGAACATCTCTCTGGCTCAGGTCTTCAGCAAAATGGAGCAGGTGGTGGAGGTGCTGAGCATCGAGGATTATTCCGTCAGCCAAACCACACTGGATAAC
Seq A exon
GTAAGTAAACCTCGAGAAATAATACTAGTTTAAAAAGTCATCAAAGTGCATATACATCATTTTAAAAGGGGATTTATTTTTCAATGTCCTTCTAAGACTACCTTTAATGCTCACTAAAAGCTTCTGATTTTCTAGTACTGTCTTCTGTATGATCAATTTGAAAAGGCTCTGAACAGAGACCTATAATGCCCCATTTTACAAGATGTAAAATAAGTCTCTGATGTGCCAAGAGTGCGTATGTGAAGTTTCAGCTCAAAATACTCCACAAGTTTTATAACTCCTTGAAACTACCCCTTTTAGGCTTTGATCTAAATTGTGCTGTTTTGGTGACTGTCCCTTTAAATTCAAATGAGGTTGTGCTCTTTTCAAAAGAGGGTGGAGCTACAATCGTAGCAGTAGATTCAAAACAGATCTAATGCAGTGTTGAGCTAGTTACTGAAAAATAGTAACTAGTTACAGTTATTAGTTGCTTCATTCAAAAAGTAACTCATTGAGTTTATTGGTGACTTACACTAAAAATTAATTTGAGTTACTTTTCTAAAGAACATTTTTAATGCTCCCATTAATCCCATTATAATGTCACTTCATTGCTGCATGGAAAATAAAGTTGCTTCAGCATCATAAAAGTTGTTGTATTTAATCCTTAAACATGTTCCTTCACGGGTTGAGCATGAAAACTAGCAACAATATAAAACAAATACAAAACCTTTATGAAATAAATGAATGAAAGTAATCTGAATTATCATTCAGAATTAATTTGGTGAAACTCAGCACCAAAAAAAAAAAAAAACCCTGCTATTATAGACAACCCTAAATGCATTTTAAACATAACAAAAACATAACAGCTGCTCAAAAATCAAATCTATGAGCAATTTTCAAACTAACCACAAATTAAATGTATGTCAGCAACTTATGCAAAGTAAGCTGTGTATATTCAAAGAGCAAAATCTACTGTGGTATAACAGCTATAGAAATATGTAAAATATGTACAATAAAAAAAAAATGACAGCATTTTTCTGAACACTATACATTTTAAATAACGTGTTCTGAAATACAACAGAAATGTGCCACTGTGTCTACTAAACTAATCAATTTTGTATACAGATAACAAATGTGTGATTATTTATTTGAAACAACAAACATTACTTAGTAGTATTAGTAATAGTAATTAATAATAGTAACGTTAATAGTCTCTCGGTCTCTCGCGAGCACACTTGGCCCCTCTTACGCACACTCAGTCTCTCTCCTAGACACACTTGGTGTACCTCGCTTCCATTCGTGTTTTTTTTTTTTTTTGCTCGACTTTGTTCAGTTTGGTACCTCATACACGACGCGTCATCTTTAAGGTGGTTGGTTGGCATCCACCAATCCCACAATGAATTGTCGCTGTAAACAGGAACATGTGAAATAGACTGCAGCCAAAATTAATTGACATACCAAGTAACGGGCAAACGCATCATATTATAATGTTATCAGAGTTAATATATTGTAAAAATAATGTGTTACAGTATTAGTTACTGTCAGAAGTAATGCTATTACAGTAACAGATAACTAGTAAGGCATTATTGCCCAACATTGGACTAACGTTATATCTTTGTGAAAAACTGAAAATTTGAAAAGAAGTCTCTGAAGAAAGCAATCTATGAAGACAATGGTGTTCATGTGCATCCTAAAACTCCATATTTATAATCCTCTTAATCGCTGACATTAAGCTCAGCAGGTGAAAACTCTAATGGCAGACGGCTGCTTCTAACTGTTTTGACGTTCTGTTCTGGGCTGTTTTTTGCTAATGAGGAAGAGATTGTTAATAAAGCTGCGGTCACACTAGAGTTTGTGTGTGCAAAAGTCTGTCAGACGGCGCTGCAAAATGGGCCGGGATTAAACAAGATAATTAGACATTTATAAAAAATAAAAATAAAAAAGAGAGCAATTGCTCCATGTTTAAATTTCTGTCCAGTGAGGTCATGTTTTGTTCTTCAATTGGTTTCACGCAGTCTAGTGATGCGATTTCAGAGTTTCAACAAGCTTGAAACTTGACGCATGAGTTTGCGTTTCCGGTCTGATGCATTTGCGTGTGTATGAATGGAAGTCTATGGGGAGAAAAGCTTCATAGGTGTGGCTTTACCACTCTGATGACACATACAAAGGGAGAGTTTTTTTTATCAAGTGTGATTATAAAAATATAATTATTTTTGTACCATTAGAGGCTGGCTATATTCACACAGTATTTTCACACAGCTGTGCTTAAATCTTTTATAAAATTTATATTTACATGATAGATCACCTTTAAATTGTCTTAAATTGAATTGATTATTCTGCATTTACTGATTACAATCATCTTATCATATTGTTATCAGTTTGTTAATGCAAAAGCCTAAATCAGTGTGCAAATTAAACCCAGAGGCTGAAAATGTTATGACATGAAAAGTAGTAATGTCTTATTCTCTACTTCTTTTTAG
Seq C2 exon
GTCTTTGTTAACTTTGCAAAAAAGCAAAGCGACAACTTAGAGCAGCAAGAAAGTTCTCCATCTAGTGGTGGCCAGTCGCCACTGCAGCATCTGCTCAGCCTCCTCAGGCCTCGTCCTGCAAACACTGAGCTCAACGCCCTCGTGAGTGAAGAGCCTGAGGAACTGGAGAGTGATGATGACGAAGGACTGATCAGCTTTGAGGAAGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013500:ENSDART00000141554:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.629
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]