BtaINT0011214 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45181616-45182208:+
Coord C1 exon
chr7:45181616-45181856
Coord A exon
chr7:45181857-45181957
Coord C2 exon
chr7:45181958-45182208
Length
101 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACC
5' ss Score
5.57
3' ss Seq
CCTGGGCCATCCACCTCTAGGTA
3' ss Score
9.73
Exon sequences
Seq C1 exon
ATTCGGGGCTGGCCATACACTGACCCTGAGGGTGCCCTTGTCGAGATCCAAGTTGGCGGCCGACTTTGTGGCCCAGGCATTCCCGGGAGCTGAGCTGCGGGAGGCGCATGGTGGCCGCCTGCGCTTCCAGCTGCTGCCAGGAGGGCGCTGCACCTTGGCGCTAGTCTTTGGATTGCTGGCAGCACACGGCGCAGAGCATGGCGTGGAGGACTTCTCTGTGAGCCAGACCACGCTGGAGGAG
Seq A exon
GTGACCGCCATGCCAGAACGGGGCTGGGGGTAAAGATGGGGTTGGGGGCTAGGCCCTCAAGGTGACCTCTCCTCCTGTTTCCCTGGGCCATCCACCTCTAG
Seq C2 exon
GTATTCTTGTACTTCTCCAAGGATCAGGGCAAAGAGGAAGATGAGAAGGAGACAGAAGTGGGGGCTGACCCTGTGCTAGGCCCGCAGCACCCTAAACTCATAACCCAGTTCCTCGATGACCACAGCATGGCTGAGACGGTCCTCTGAGCCTCCTCCTCTGTGGAGCTGGAGGGACCAAAGCAGGGCAGAGGGGCTGAAGCTTGACCCAGACTCCAGAGGCCCTGGAGGAAATAAAGGGAAGCTGTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.292
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACTTCTCTGTGAGCCA
R:
TGGAGTCTGGGTCAAGCTTCA
Band lengths:
252-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]