GgaINT0144879 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2376881-2377614:-
Coord C1 exon
chr28:2377371-2377614
Coord A exon
chr28:2377297-2377370
Coord C2 exon
chr28:2376881-2377296
Length
74 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CTCACCCCAAATCCCTGCAGGTC
3' ss Score
8.94
Exon sequences
Seq C1 exon
GTTTGGGGATGGGTACACAGTGGTGGTGCGGGCGGTGGGGTCCGGCCCCGCGCTGGGCGCTGTGCAGCATCTGATGCAGTGCAGCTTCCCCGGCATCGCGCTGCAGGAGCAGCACGGCAGCACGCTGCAGTACCGCCTGCCTTCCCACGCCTGCTCCCTGGCACACGTGTTCGGCGTGCTGGCAGCGCACTGCGGGCGCGGCCCCATCCAGGACTACTCTGTGTCCCAGACCACCCTCGACCAG
Seq A exon
GTGATGGCGGTGAGGGGCGCTATGGGGACGGGGTGTTTCCTGCTGGTGCTGCCGCTCACCCCAAATCCCTGCAG
Seq C2 exon
GTCTTTGTGCACTTTGCCAGGGAGCAGAGCGACGGGGACGTGGGGCAGGACGTGGGATCGGGGCAGGATGCAACCGCAGGGCGGGATACGGCCCCAGTGCCCGGGAGGAGGCCGATGCCGTTCCTGGAGGACGACAGCTATCGGGAGAGCGCGGTCTGAGTGTGGCCGCGGGGTCTCTGGACCCCCACCCCCCGCCCCAGCCCCGCTCCCGGCTGGGACACAACCACTGATCCCGGTCTGCCGCTGGCCCGGAGCCCGGCTGCGCCGCTCCTGCTGGGCTGGGGGTCCCGATCCGCCGGGTCGGAGCCGCAGGGGAAGGCTGGCCCGCTCCTCGCGGCAGGGCTGCACCCGGTGCTGGGCGCGGGGCTGTGCTGCTCGTGCTGCTGTCACATAGCGAATGGAATAATAAAGCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.673
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCTGTGTCCCAGACCACC
R:
GATAGCTGTCGTCCTCCAGGA
Band lengths:
172-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]