RnoINT0010390 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12742433-12743026:-
Coord C1 exon
chr7:12742786-12743026
Coord A exon
chr7:12742668-12742785
Coord C2 exon
chr7:12742433-12742667
Length
118 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACT
5' ss Score
5.88
3' ss Seq
CCATGTCTCTGCCCTGCCAGGTG
3' ss Score
9.36
Exon sequences
Seq C1 exon
ATTCGGGGCTGGCCACACACTGACTCTCAGGGTCCCACCGGACCAGCCGGAACCGGCGATAGCCTTCATTGTGACCACATTCCCTGATGCTGAGCTTCGGGAGGTGCATGGCAGCCGTCTGCGCTTTCAGCTGCCGCCTGGGGGCGGATGCAAGCTGGCACGAGTGTTCAGGGAGCTGGCTGCGCAAGGCAAGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTTTGGAGGAG
Seq A exon
GTGACTTCGGGCACCATCCAAGGGCTTGAAGGGAAGAGCTGAGGGGCCTCATGATCCTGGGCTGACATCTTCCCCACCCCCATGCCTTTCTGTCCCCTCCATGTCTCTGCCCTGCCAG
Seq C2 exon
GTGTTCCTATATTTCTCCAAAGACCAGGGGGAAGAGGAGGAAGGCAGTGGACAGGAGACTGAAACGAGGGAAGTTTCCACACCTGGCCTGCAGCATCCCAAACGGGTCAGCCGATTCCTGGAAGACCCCAGCTCTGTGGAGACCGTGATCTGAGCGTGCCTGCCTTGGGACTGAGTGGCATAACTCAGAGGGTCGCCCTGGGCTGTGGAGGAAATAAAGAGAAACATGAACGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGCCAGACCACTTTGG
R:
TATTTCCTCCACAGCCCAGGG
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]