RnoINT0010215 @ rn6
Intron Retention
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2667269-2667692:+
Coord C1 exon
chr3:2667269-2667406
Coord A exon
chr3:2667407-2667491
Coord C2 exon
chr3:2667492-2667692
Length
85 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
GCCCACCCACCCGTCCACAGGTG
3' ss Score
9.83
Exon sequences
Seq C1 exon
GAACGCCACCATACGAAGGTGCAGTATCAGCTCAAGTCGGAGCACATCTCGCTGGCTCAGGTGTTCAGCAAGATGGAGCACGTGGTCGGTGTACTGGGCATCGAGGACTACTCAGTCAGCCAGACCACTCTGGATAAC
Seq A exon
GTGAGTGTGCTGCGTGCAGTGAGGGGTGCCCTCTTGGATCTGCCTGCACCACTCACTCACCAGTGGCCCACCCACCCGTCCACAG
Seq C2 exon
GTGTTTGTGAACTTCGCCAAGAAGCAAAGTGACAATGTGGAGCAGCAAGAGGCTGAGCCATCCACCTTGCCGTCCCCCCTTGGACTACTTAGCCTGCTGCGGCCCCGCCCTGCACCCACAGAGCTCCGGGCACTGGTGGCCGATGAGCCTGAGGACCTGGACACGGAGGACGAGGGCCTCATCAGCTTCGAGGAAGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268:ENSRNOT00000020339:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.507
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTTCAGCAAGATGGAGCA
R:
AGGCTAAGTAGTCCAAGGGGG
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]