MmuINT0007830 @ mm9
Intron Retention
Gene
ENSMUSG00000026944 | Abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:MGI Symbol;Acc:MGI:99606]
Coordinates
chr2:25289484-25290047:+
Coord C1 exon
chr2:25289484-25289594
Coord A exon
chr2:25289595-25289828
Coord C2 exon
chr2:25289829-25290047
Length
234 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCCCCATGCCTTGCCCACAGGAG
3' ss Score
10.38
Exon sequences
Seq C1 exon
GTCTATCGCTTGCTTTTTGGTCCTTTGCCTGACCTGGATGGAAAGTTGGGTTTCCTTAGGAAGCAGGAGCCCTGGAGCCGCCTGGGTAGCAATCCTCTGCTCCAAATGGAG
Seq A exon
GTGAGGGGCTTGACCCTAGGAGAGGGATGGAAGGAAAGGCGCTTCCTCAGCTCTACATACATTCTGGGGATCTGTGGTGTGCATGGGAAAGTGGAGGCTGGCAGTGACTCAAGTGCTCCCCAGCATAGAGCCAGCACAGTGAATGGTCACAGCAAGCTCTTGTGCTCCCTCAGGTAGGGCCTTACCCCTTTCTTGGAATGTCAACTTTACCAGTCCCCCATGCCTTGCCCACAG
Seq C2 exon
GAGCTGCTGCTGGCTCCTGCCCTTTTGGAACAGCTCACATGTGCTCCAGGTTCTGGGGAACTGGGCCGGATTCTTACCATGCCTGAGGGTCATCAGGTAGACCTTCAGGGCTACCGGGATGCTGTGTGCAGTGGGCAGGCTACAGCTCGTGCCCAGCGCTTCAGCGATTTGGCCGCTGAGCTCAGGAACCAGCTGGACACAGCCAAGATTGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026944-Abca2:NM_007379:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTTTGCCTGACCTGGATG
R:
AGCAATCTTGGCTGTGTCCAG
Band lengths:
305-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: