DreINT0023634 @ danRer10
Intron Retention
Gene
ENSDARG00000013500 | abca2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:ZFIN;Acc:ZDB-GENE-050517-1]
Coordinates
chr5:24643794-24652563:-
Coord C1 exon
chr5:24652453-24652563
Coord A exon
chr5:24644016-24652452
Coord C2 exon
chr5:24643794-24644015
Length
8437 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAG
5' ss Score
4.86
3' ss Seq
TACCTCTTATATTTTTTCAGGGA
3' ss Score
9.72
Exon sequences
Seq C1 exon
GTATATAATCTCATCTTTGGGACGTATCCCAAAGCGGGATCAAAGGGAGGAGAAAGAGATGAAGGACAGCACCAACTCAACAGTCCTGGAGAGAAGCTTGTACAGCTGGAG
Seq A exon
GTAGAGTGATGCCCTTCAAAAAATACACATATTTGAACGTTAATGAATTTATGTAATAATATATAACAGTTAATTAATTCATTTGTTTCTTCATTCATTCATAAATTAAAAACAACATGTTGATGTACAATATGTTAATGCAACAGTGCCTTTTTCTTTCACATATTGTTATCTTTCCAAAAATTAAACCCTCTTTTTTTCCCATCCATTATTATTCTTTATCCCTCGAAGCACATTTTGCAAAAAAGCACCCGCTAATTGAAAAAATATGAACGTATAGGCTGCTTAAAAATGACTAACGCTGATTTTATATTTCTTGAACTCTAATAAAATGCACAGAAAGTGAAAATACTACACTGACAGGAATGCAAGCACACAACATTTGGATAATAGTATAACTGTCTCAAACTTTACAGACTTAATGCAATGCTTGAGCCGCTGCAGTGCCTGTCTCATTCATATTTCATACTCGCTGAGCTGCTGTAAGCAACTTTTTTTGAATACCACACATAATATACCTACCACTTGACAGATGTGTCCTGAGAAATCACCTGTCTATGTCCCAGGCCTAGACATCGCAAACAAGCAGACAGCGTCTCTTCAATATATTATTTACTCTCTCTTGACTTTAAATCCTTGGCTGTTTTTACAGTCGTTAGATTTGATTTGCTAAGCCCAGTCATATTAACGCATTAATTCTGATAGTCATAAAAATGAGTTTTAGCTAATGATGGGGTGTTGAAACTCTAGTTTGGAGTCAGTAGACGATTAGCCGTCATCTCACTGTGCATCAGTGGCAAGTGGCAGATTACTGAAGTGGGTGGAAAAAAAGTCCCCTTCCTGCATGTGGGGATTTTTTATTGGGTTTTTTCTTCATATTTTGTACATTTAATGATTTATATTGTTACAATAGTAATAATAATAATAATAATACAATAATTATTGTACCCACACTTGTAAAAAAAAAACAAAAAAAAACACATAATTGTTAAGAAAGTAGTAGTAATAATAATATTATTCGTATTGTAAAAATGAAAATAACTGTTAAAAATAATCAGTTTCACTGGATTACTAGGGTTTATTAGATATGGGTTCAAGTAAAATATTAATATTTTATTTATTCTGTAAAGGACTGATCGATAAAGGTTTGCTTTTTTTATTAAAATATGTTTGAAATTAAAAATACTGACAGATAGAGTTTTTTTTATTTTAGAAAATGATAATTGATCAGTTATTGATCTGTAATTGAAAATCAGGGTAATTCCACCTAGCATTGTTTTCCTAACACTTCTGAAGTAAAAAAGGGTATTGTGTTGCCTAAAAAGGAGTATAATCATGTCTGATAACATGACACCATTATGTTTTCATTCAAACAAAACTTGACAAGATTGTTGTTTTACATTTGGAAGAAAGAGTTTTTAATATATTTTATTATTAATTAAAATTTTACATTTAAATTGGAAATCCAGAGAAACTGAGAATTTTCAAATGGTCTTGTAAGGATGAGGTTTGGAAATGGAAATGGAGTTCCAGAATGGTCAGCAGGCAGGGGTCAAACCAGAAGGAAAACAAAAATGTAAAGTTAATCCAAAAAGGGTGAATCCAGCAAACTGGCAAAGGTCAAATTAGGCGGCAAACAATAATAAAACAAAGAACAGTCCAGAATCAGAACGTTCGAGGTTACTAAAGTAACCCTTCGTTCCCCGAGGAGGGGAACGGAAGCACTATAAGTGAATTTGATTGTAAAATCCACGCATTGGGAGGTTCGGTTCAGAAGCTACTCGTCTGAAAGAGTATTGAACGGGCCAATTAAGAATGAATTGGCAGCGCAAGCCTGCGCAGGTGAGCGGCATAAGCAATCAACTGAGTATATAAGCTCACCTGGCGCCAGCAGACGCTATCCTTTTTAAGCTGAAGAGACTTTCAACAGCTAAGGGACAGTCATTATGGCGACGGAGTATAGTGCTTCCGTTCCCCTCCTCGGGGAACGAAGGGTTACTTTAGTAACCTCGAACGTTCCCCTTCGGGGGGAACTTCAGCACTATAAGTGGATTTGATTGTAAAATCCACGCATTGGGAGCCCATTGAAAGCGCCATAATGACTGCACCTTACCAACACCCCCGATGAGGAGATAGTCAAGCAAGCGTGACGCACCCACATCATGGGGGGCGCGGTCCTCCAACGTGTCCCTGGCCCTAATTTATCCTACTTCAACAGAAGTTTTACGGATTTAGATATATTTTTTGGGAAGTCGTGAGCATCTAGATAATTCTAGGAAAATACGACAGTACGTTGGGAAGCGTGCAATCCCGATAGGGAGGACGCTGCGGAGGCCATCCGTTACCCAAGGGGGGATAGATGGCAGAATTTACATATGGACTAGCCCTAAAAAGGGGGAGTACGCATAGCAAAAGAGTGGTTAGCGGGGAGGGAAGACACGGGTCCGCCCAGGAGGGGGGACTTAACCGTGGCTGAATAAGCATATGGGATCGCCTAGTGGGGACCACGCATAGCAGGCACCTTTACCCAAAACGCGGGCTGACCAGCGGGCAGACCTACAACGTAGTGGGCCAGCAAGTGACTCCTCCGCTGAGTCAGTGCTGGGGGCCACGGAGGAATCTGCAGGGCTCACCTGACGGGGAACTTTACTGACAGATAAAAAGGCGCACGTATCTCCGTGTTAGGGAAAATGGCGCAGCAAGCGTGTTTCAACACCCTACCGAATTGTTTCCTCAATCACCAAGGGTTACCTAATACCCTTGAGGAAACCGGCTCCACTCGCAGATTGTAAAACCTTGCAAATGTGTTGGGTGTCACCCAGCCCGCAGCTCTACAGATGTCTGTTAGAGGGGCGCCGCGTGCGCGCGCTCGAGAGGATGCGAAGCTCCGAGTGGAGTGCGCACGCGCTCTCGGGGGACGCGGCTCATCTCGGCTCTGATAGTGAAAGAAAGGCATCCACAATCTAGTGGGAACTTATTTCGGTACGGCACTTCCCTGCTGCCGACCGCTATAACAGACGAAGAGCTGCTCAGATGATCTAAACTCTGAGTGCGGTCCGGATAATACGCAAAACGCGAACTGGACAATAAAGAAGGGCTGGGTCTGCCTCCTCCGAGGGCAGCGCTTGCAGGCTCACTACCTCGTATTAAAACGGAGTGGTAGGAACCTTGGGCACATATCGCGGGCGGGGTCTCAGGACGTGAGAGAAGCCAGCCCAATTACAGGCACGAGTCACTGACCGAAAAATGCCTCCGGGTCCCCGACCCTCTAATCGATATCAACGCGACCAGCAGAGCTGTCTTCAGGGACAGAAATATACTGAGTCGAGGATCGAAGGGATCTGACGCGGCTTGTGTAGCGAGGGCGAGATCCTAAGAGGGCATGAGAGGGGGCGGGGTGGATTAATTCGCTTAACGCCCCTGAGGAACCGGATGATGAGGTTATGCGTTCCCACGGTGCTGCCAGCCACCGCGTTATGAGAGCGGAGATGGCAGCCACGTAACCTTGAGTGTGGAGGGCGACAGCCTGCTCTCCAACTTCTCTCGGCGTAAAGAAAGCACAACGCTGATCTGGCAAATTACGGGGGTCTTCTCAGCGAGAGACACACCATTCAGTGAATAGACTTCACGTCAGGGCATAGGCGCGCTCGGGGAGGGGGCTCTAGCCCGAGTGACGGTATTAGCCACCGCAATCGGAGGTTACCTAAGTCTTCCTCGCGTCTAAAAATCTCCAAAGATCGGCGAGGGTGCCAGGTGGTGCCCTGTCCCTGAGAGAGTAGGTGCTCTCTCGAAGGGACTGCCAGGGGAGGGCTATCGCGAGGGAGAGCTCTGACATCCAGTTCCGGTTGAGCCAGAGGGGCGCAACCAGCAACCTGTTCCTCGTCCTCCCTGACCTTGCACAGTAACTGCGCGAGCAGGCTCACTGGGGGAAACGCGTATTGCGCGTGCCCCGAGGCCAGCTGTAAGCCAGTGCATCCGTGCCGAGAGCACTCGGTCAGGGAAAGAACAACTGGCAATGAGCGATCTCGGGGGAAGCAACAGATCGATCTGGGCTTCCCCGAATCGCGCCCATATCAGCTGAACAGACTCGGGGTGGAGTCTCCATTCTCCAGGACGCAAGGCTGCCGTGAGAGCGCATCGGCTGCACGGTTGAGCTTGCCTGAATATGAATGGCGTGCAGCGATTTCAGCCGCGGATGACTCCAGAGGAGCAGACGGCGGGTGAGCTGAGACATGCGGCGAGAGCGCATACCCCCTATACGGCTGATATACGCCACCGCCGCCGTACTGTCCGTCCTGACCAGCACGTGTTGCCGCTCCAACACCGGAAAAAAACGGTGGAGAGCGAGGAACACTGCCAACAGCTCCAGGCGATATGCCAATGCAACTGGGTACCTTTCCACAGGTCCGCAGCCGCATGCCCGCAACGCACAGCCCCCCAGCCCGTGTTGGAAGCGTCTGCTGAAACGACAACAAGACTGGACGCCTGTTCTAGAGACACCCAGGCCTGTAGGAACGAGGGGTCGCTCCAAGGGCTGAGGGCGCGGCGACACAGCGCAGTAACAGAGACTCGGTGTGCGCGCGCGTGCCATGCGCGTCTGGGGACTCGATCGTGAAGCCAGTGCTGAAGTGGTCTCATATAGAATAATCCGAGCGGCATGAAGCGGCTGCGGATGCCATATGCCCCAGGAGCCTCTGAAATAATTTCAGTGGGACCACTGGTTTACTGTCGAGCTCTCTCAGACAGTACAGCATCAGCTGAGCGCGCTCTCCGGAGAGGCGCGCTGCCATGGTGACCGAGTCCAGCTCCAGCCCGAGAGAAGAGATCCTCTGCACGGGGGCGAGTTTGCTCTTTTCTCGGTTGACCTGAAACCCCCACAGGTGGAAGTGCCAGAGCACTTTGTCTCTGTGCATAATCAACTCTGTGCATAATCAAAAGAGAGGGCAAAATTCAGCCAGTCGTAAAGAATTGAGTATGCAGATGCCCGCGAGCCGAAGGGGCGCTGAGGCACCCTCCGCGGGCTTGGTGAGGACCCGCGGAGACAGAGAGAGCCCGAAGGGGAGGGCTTTGTATTGCCAAGCTCGACCTTCAAACGCAAACAGCAGAAACTGTCGGTGGCGAGGAAGAGTGGAGACATGGAAATACGCGTCCATCAGGTCTAATGCTGCAGACCAACCCAGAGGACGAACGCACCGGAGGATGCGCTTCTGCGTGAGCATTCTGAACGGCAGCTTGTGCAGGCAGCGGTTCAAAACGCGCAGATCTAGGATTGGCCGTGACCCACCGCTCTTTTTGTGCACGATGAAGCGTGGGCTGTAAAACCCGCTCTCCATCTCGGCTGGAGGGAGCGGCTCGATTGCATCCTTCGCCAGGAGGACAGCAATCTCCTCTCGCAAGACAGGGGCGGACAGGGGGCTGACCCTGGTGAATACACACCCGTGACTTGGGGGGCCGTTTCGCGAACTGAATCGCATAGCCGAGTCTGATTGTGCGTATGAGCCACCGCGAAGAGCTGGCCCGCGCTAACCAGGCAGGCAGAGCTCTCGCTAATGGACTCATCGCTACAATCGCTGACGTACCAGCAGTGGGGCAGCGCGGAGTGGGTGTGCTGATCCGGGAAGCTCGCGGGTCCCACGGAAAAGCTGGAGGTGAGATATTTGCTCTCACTCCAAACCCGAGCTCCGGAGGGGAGGCTCGAGGGGTGGGAGAAAGGAGACCGTCCTCCCAGCGCTCGTGAGCCACTGGCGAAACGCACCGAATCTGCAAGCTAGAAAGCATAGCGTCCCAGACTGGCAGATTTCGGGCTGTCACATCTGGGGAAGTGAAAAGTGCCCTTTCATAATGTTTTCATGGCAGTAAAAAGTGCCGTTGGAAATGGGGCCCCGCCCTCCAGCGGGGAAAGAGCAAGTTCCCTCTTCTCCAGATGGCCTGTCCCAGGGGCGCTTCGCGGTCCGTTGCCGGACTTAGCGGCGTTCTGGGCAGGGGGGCTGCCTGCTTCCGAGGTGCCCGACGCGCTCGCTTCGCCGGAGGCGTGTGCGGGGGCGGAGCAGCTCTCGTAGGCGGGCGCCTTCGGCGAGGAGCAGGTATGAATGGCACGGCGGGCGGAGCGGGCTACGGACCGCCGATAAGACATCACCCACCAACCGCTCTCTCAACGCCTTGAATTCCTGGGTGAATTCACAGACAGTGTCGCCGAACCTGGCTGGGGATATGGGGAAGTCAAGAAAGCGGACTTTGTCGACTTTGCGCATATCAGCCAGGGGTGGCGCTCCTGGACCACTAATGTGGACATCGTCCTCCCCAACGCACACGCAGCGGACTCAGTAGTCCGAAGAGCTAAGTCGGCGGCGGTGCGAAGCTCGTAAGCCTGGGTTGGACCCACCCTCGTGCAGCTCGGCCAGCGCCTGCGCTTGGTAGCGCTGGTAGGTGGCTATCGCATGCAAGGCGGAAGCAGCCTGGCCCGCAGCTATGTAAGCTCTAGCTCCGAGGGAGGTAGATAACTTACAGGCTTTGGATGGGAGACGAGGCGGACCCCGCCAAGAAGAGGCGCCGCGCGGATTTACCGCCATCGCGCACTCAACCTGAGGAATCGCCACATACCCCCTGGCTGTTTCACCGTCAAGAGTGGTTAGGGTGGAGGAACACGCAGCACAAGCAGAAAAAAGTGCTTTACAAGACCGCGTGAGCCTACTTTGCACCTCCGGGAAGAAGGGAACGCCCCTCTAGTCGGTCCGGCCGCGGAGCTGGGGGATAAACCATCTCCAGCCCACGGCCGAAGCAGCCCGGGAAAGCACGGCTAACATGTCCGTTTCAGGATCCGTAGTGACAGCGCTCACCAGCCCGAAGGGGGCGAGCGGGTCTGGATCTTTATCATCGGACAATGAAAGCCCACCCTCCGATGCCGCGGTGGACATCTGGTCTCCGGTGTCATCGGGCGTAAGGGCTACCATCTGTTAGACGGATCGCTTCCCCCGCCCGAAGCTTGGATGGAGCGCTTAGAGGAGCGGGAGGTCCGCGGGCCCGTGGGCGACGGATTATCTCTCGCTGAAACCCTCAGATCTGCCCGAGTGCCCGCTGCAGAGCAGGGGACAACTGGGGTGGTTCGCCCTTTTGCAAAGGCTAACCGCGATCTTGCGCAACAGTCATGGCATCGCAATGACGACATGAACTGCCCGCGAGCAGCGCATTAACATGCTGGACCCCCAGACATGTAACGCAGTGCCCGCGCCCATCATCCGAGGACAGGAAACCACTGCATCCAGAAACGCAAAGTCGGAGCGCCGTCCTGATAAGGACGTGCTGCACGACTGTGTTGCTCTTTCTGTGAAGTTTGCAACTTTATACGCACCGCTCTGGAGGACCGGACCCAAAGAACGCCAGGCAAGGGAGAAACCCAGCTCGACCGTCTGCCACTGCGTGTACACACTCTGGACCGGGAGAATGCTCTCGTTCGCTCAGAATCGCTGGTCACAGCAGGAGGAACCCTCATCGACTCGATCAGAAAGTCTCTGAAGCGAAAAGGATAGCGTCTGCTGGCGCCAGGTGAGCTTATATACTCAGTTGATTGCTTATGCCGCTCACCTGCGCAGGCTTGCGCTGCCAATTCATTCTTAATTGGCCCTTTCAATACTCTTTCAGACGAGTAGCTTCTGAACCGAACCTCCCAATGCGTGGATTTTACAATCAAATCCACTTATAGTGCTGAACTTCCCCCCGAAGGGGAACAGACAGTGCTAAACACAGAAAGCAAGAAACACTTGATTTAAGTTCATGACATGAAACATAATACAATCTGCAACAATGAAGATGTGTGAGTGGGGTGCTTAAATAGTGTGTGTGTAATGTCCTGTAGCTGTGTCGGTGTAATCAGTGTCCAGGTTGATAACAGCTGTAGATGGTTGATTAGCACAATACATGATGGGAAGTGTAGTCCTGGTGGAGTGTACATATATCTAGAGTGTCCACTAGTAAGTCTGTTGGGTATTCCAGCTAATACTAGTGACAGGACTAGAGAATAGATTGGGCTCAAAAAACTAAACCTGACCCTATCCGAGTCCATGCACCTTGTGTCCGAGCTGACTCAGTCTTACACATTAACTGTAATTATGAGCCCGTGCCAGATTTTTGACATGACATTTCAGTCTATCCCTATTTATGCTCAGAAGCAACTACTTGGAGGCTGGCACAGTGTAGACGGGGGTCTGATTCAGAAGGCACTGAGAGATCCCACAAAAGCTGCTCACCGTCAAGCTCTTCTCAAAGTCTTCTCTCAGGCGTTGGGCATCGCTGGCGGTGTAGGAGGTCAAAAATTCGATCCTCAAGCACTGCGTGAGATGGAGGTCAGTCTGACACTACACTTTAACAGTTCATTCCACTCTAATCATATCCTTGAGTTCAGTGTCCATGGCTGACAAATGTACCTCTTATATTTTTTCAG
Seq C2 exon
GGAGTTCTGTTGACTGGTGCAGTGCTTGAAAGCCTTACCTGTGGGGAAGGAGGGAACAGTGAGATTGGCAAAATCCTATTGGTCCCTGAGAAACAACAGGCGGTTTTACAGGCTTACCGCACGACTGTTTGTGGTTTAGGGGCGGGGCAGAGGGCGGAGCTTTTCAGACAGTTGAGTGAAGAACTGAGAGATCAGATTGACACACAGAGAGTCTTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013500:ENSDART00000141554:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=NA C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]