MmuINT0008030 @ mm9
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79461196-79461582:+
Coord C1 exon
chr10:79461196-79461269
Coord A exon
chr10:79461270-79461501
Coord C2 exon
chr10:79461502-79461582
Length
232 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CACCCATCGTTGCTTCACAGGCA
3' ss Score
7.97
Exon sequences
Seq C1 exon
CACGACCACAGGAGAGTGACCAGCCGACCAGTCAAGGGTCAGTGACTAAGCTTCTGGAGAAGATCCTGCAAAGG
Seq A exon
GTGAGGGGGGGCTGGCGCGAGGAACTCCCGTGGCCGCCTGGGATGAGCCCTTGCCCCTTTCAACTCCTCCATTCCTCATTTGTAAAGCGGGGTGATAGGAGCTCGGTGGGGATCAGTGGGGGGAGTGCTCACCTCCATTCTGGCTCTGTGGGAGGATCATGGGTCCAAGGTCATTTATGGCCAGGGGACTACTGAGCAGTCCACCCAGGTCTCACCCATCGTTGCTTCACAG
Seq C2 exon
GCATCCCTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTATGAGAAAGTTCTCAGATGCTATCAGGGATCTTGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-Abca7:NM_013850:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCACAGGAGAGTGACCAG
R:
TGGGCAAGATCCCTGATAGCA
Band lengths:
149-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: