HsaINT0000824 @ hg19
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:37]
Coordinates
chr19:1042314-1042825:+
Coord C1 exon
chr19:1042314-1042396
Coord A exon
chr19:1042397-1042744
Coord C2 exon
chr19:1042745-1042825
Length
348 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGG
5' ss Score
7.68
3' ss Seq
CTTGTGGTCTTTCTCCCCAGGAA
3' ss Score
11.62
Exon sequences
Seq C1 exon
CCCAGCCTCAACCAACCAAGCAGTCTCCACTGGAACCACCCATGCTGGATGTCGCGGAGCTGCTGACGTCACTGCTGCGCACG
Seq A exon
GTAGGGTGTCGGGGCGGGACCGCGCTGACTTCCTGGGACACTGCACTGGGGATGTCCTGGCACTGCCCCACCCCGGGCCAAGGACCTCCCGTTCCAGGCATCCAGGCTGTCCCTGGTCTCTGCGGTGATGCTGCTTGTCCGTCTGGGCCCCCAGACAGAGTGTGTCTGACCCAGTGAGGAAGACTCGTCTGTGAGATCTCCAATGAGTCCCTTTGCCTCTCAGAGCCTCAGTTTCCCTATTTGTAAAGTGGGGGCTATGATAGTATGGTCTGCCTGGGAACTGGCCAGAGCGCTGGACCCCTAGTGAGTGTTCAAAATCATTGTCCCCCTTGTGGTCTTTCTCCCCAG
Seq C2 exon
GAATCCCTGGGGTTGGCACTGGGCCAAGCCCAGGAGCCCTTGCACAGCTTGTTGGAGGCCGCTGAGGACCTGGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687-ABCA7:NM_019112:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)