RnoINT0010392 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12760030-12760407:-
Coord C1 exon
chr7:12760334-12760407
Coord A exon
chr7:12760111-12760333
Coord C2 exon
chr7:12760030-12760110
Length
223 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCTTGCTGTCTTCCTCACAGGCA
3' ss Score
11.18
Exon sequences
Seq C1 exon
CCTGGCCACAGGAGAGTAACCAACCGGCTAAGCAAGGGTCAGTGACTGAGCTCTTGGAGAAGATCCTGCAACGG
Seq A exon
GTGAGGAGGGGCTGGAGTGAGGAACTCCGGTCTTTGGCCTGGAACTTGCCCCTTTCAACCCTCCCTTTCCTCGTTTGTAAAAGGGGGCGACAGGAGCTCGGTGGGGTGGGGAATGCTCAGGAAGTGGATGCGGGAGGATCATGGGTGGAAGGTCATTCTTGGCAGAGGATTACTGAGCAGTCCACCTAGGTCTTGCCTGCCATCCTTGCTGTCTTCCTCACAG
Seq C2 exon
GCATCCCTGGAGACCGTGCTGGGTCAAGCCCAGGATTCCATGAGAAAGTTCTCAGATGCTACCAGAACTGTTGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACAGGAGAGTAACCAA
R:
TCCTGGGCAACAGTTCTGGTA
Band lengths:
152-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]