MmuALTD0000776-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79461196-79461582:+
Coord C1 exon
chr10:79461196-79461232
Coord A exon
chr10:79461233-79461269
Coord C2 exon
chr10:79461502-79461582
Length
37 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CACCCATCGTTGCTTCACAGGCA
3' ss Score
7.97
Exon sequences
Seq C1 exon
CACGACCACAGGAGAGTGACCAGCCGACCAGTCAAGG
Seq A exon
GTCAGTGACTAAGCTTCTGGAGAAGATCCTGCAAAGG
Seq C2 exon
GCATCCCTGGATCCTGTGCTGGGTCAAGCCCAGGATTCTATGAGAAAGTTCTCAGATGCTATCAGGGATCTTGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-5-7,6-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCACAGGAGAGTGACCAG
R:
TGGGCAAGATCCCTGATAGCA
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: