BtaALTD0001009-1/3 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45166603-45167010:+
Coord C1 exon
chr7:45166603-45166679
Coord A exon
NA
Coord C2 exon
chr7:45166930-45167010
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
CTTGTCATCTTTCTTCCCAGGAG
3' ss Score
10.03
Exon sequences
Seq C1 exon
CCTTTCCTTGGCCCAGTGAGCAGCCCAAGGAGGGATTGTCCCTGGCCACTCAGCTGCTGGGGACACTGCTGCAAGGG
Seq A exon
NA
Seq C2 exon
GAGTCCCTGGGCTCTGTGCTGGGTCATGCCCAGGAGTCCGTGGGCAGCCTTGTGGAGACTGCAGAGGACATGGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766-4-6,5-6,6-6-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.269 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGACACTGCTGCAAG
R:
ATGTCCTCTGCAGTCTCCACA
Band lengths:
92-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development