RnoALTD0001248-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12760030-12760407:-
Coord C1 exon
chr7:12760371-12760407
Coord A exon
chr7:12760334-12760370
Coord C2 exon
chr7:12760030-12760110
Length
37 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
CCTTGCTGTCTTCCTCACAGGCA
3' ss Score
11.18
Exon sequences
Seq C1 exon
CCTGGCCACAGGAGAGTAACCAACCGGCTAAGCAAGG
Seq A exon
GTCAGTGACTGAGCTCTTGGAGAAGATCCTGCAACGG
Seq C2 exon
GCATCCCTGGAGACCGTGCTGGGTCAAGCCCAGGATTCCATGAGAAAGTTCTCAGATGCTACCAGAACTGTTGCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-8-7,9-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.560 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACAGGAGAGTAACCAA
R:
TCCTGGGCAACAGTTCTGGTA
Band lengths:
115-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]