MmuINT0007853 @ mm9
Intron Retention
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24539210-24542098:+
Coord C1 exon
chr17:24539210-24539382
Coord A exon
chr17:24539383-24541969
Coord C2 exon
chr17:24541970-24542098
Length
2587 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AGTCTTTATCTTCTAATCAGGCA
3' ss Score
6.07
Exon sequences
Seq C1 exon
ACATCCAGTACCAGGAGAGCTTCTATGCCTGGAGCACCCCAGGCGTGGGCAAGTTTGTGACTTCCATGGCTGCCTCAGGGGGCATCTACCTCACCCTGCTGTTCCTCATTGAGACCAACCTGCTGTGGCGACTGAGAACCTTCATCTGTGCCTTCCGGAGGAGGTGGACTCTG
Seq A exon
GTGAGTGGGTCCTGGAAGCTCAGGAATGCTGGAAGGTGCACCCCACATCCTCCATGGCCCTGGGATAGTGAAGGACTGCCTCCCAGTGAGCCCAGCCTTGAAGCTTAGTCACTCCTCCCATTTGTCACACTGCCTCATGGCTGATATAAAGTGTTGCTGCAGCATGGCCAGATCCAAGTACACGCCCACAGCACAGGGGGGAGTTGCAGCATTCAATATTTTCAAGGTCTGCCAAAGGCCTGAGATCCTGATGCTGTAGCAGCCTGAGGCCATATGCAGAGGCAGTTCCTGAGTCATTTGAGGTACCCACTTGTTATCACATACACATATATCCATTGTTTTAAAGATTTGTTTATTTTATGTATGCAAGTACACCGTAGCTGTACAGATGGTTGTGAACCTTCATGTGGTTGTTGGGAATTAAATTTTAGGACCTCTGCTCACTCCAGTCGGCCCTGCTCACTCAGTCCCTGATTGCTCTGGCCTAAGTATACTGTAGCTGACTTCAGACACACCAAAAGAGGGCATCAGATCTCATTATGGGTGTTTGTGAGCCACCATGTGGTTTCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCCGTGCTCTTAACCGCTGAGCCATCTCTTCAGCCTACATATATCCATTTTAATTAATTAACATGTACATATGTCAATGTGCAGGTCAGAAGACAATTTCTGGAAATTGACTGTCCTTCTTCCATGTGGCTGTTAGGGCTGGCAGCAGGCGTCTTCACCCCCTGAGTCACCTCACTACCACACACACTCATTTTTTCATATATACCCATGGCTCATTTCCTCCCTCACATAAACAAACAAGAACAAAGACTGTTGGAATCGTATTGGGTATCCAGATTAACCTGAATTGAATGGACTCCTCAGAAACATTTCAGCTCCTCCCAAATAAGTTCTCTCCATGTCAGTCTTCCCGGTCAGATGCAGTGGTACATACATACAGTCTCGGCTACTCAGGAAGATAAGGCAGGGGCATTAGTCGAGCTCAGTAGTGAGACTAGCCTGGATAACATAGCAACACACATCTCTTTAAAGAAAATGAAATAATGACCTGGCAAGACGTTTCAAAGGAGCCAGGCAGTGGTGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAGAAAGAAAGAAAGAAGATGTTTCAAAGGGTAAAGTGCTCGCCACACAAGCCTTCAAGTTGAGTTTGTTGAATTTGATCCCTGGAACTCATGCTGAAAGGCAGAACCAAGTCCTAAGAGCTGGGAAAATGGCTACCTGGCAGTTAAGGATGCATTCTGCTCTCATAATGAACCCCAGCTCAGTGTCTGCCACCTGCCTTAGATGTCTAACAACCAAGTACCCATAATGCTAGCTGTGGGGGTATCTGACCCCTCAGACTTCTGTGGGCTCCTCACTCATGCGTGCATGCACACACAATAAAATTTTAACTTAAAAAAAGAAGCCAAGGGCTGGAGAGATGGCTCAGGGTTAAGTTAAGAGCATTGACTGTTCTAGAGGTTCTGGGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATTAGTAAGAGATCTGATGCCCTGTTCTGGTGAGTCTGAAGACAGAAACACTGTGCTGATACATAAAATAAGTGAATCTAAAAACAAACAAACAAACAAACAAAAACCTGAGCAGTGGTGGCGCACACCTTTAGTCCCAACACTTGTGAGGCAGAGGCAGGTGGATCTCTATGAGTTCAAGGCCAGCTTGGTCTACAGAGTAAATTCCAGGACAGCCAGGACTACACAAAATTTCTGTGTAAATAAATAAATAAGAAAGAGAAAAGAAACAAAAAGCAAAGCAAAGCGGCCTGGGAGATACTCTGGTGGGGCTCAGCACTTGTTGCTTGTCCAGAGGACCCGGCGTCAGTCATCGGCACGTGTGAGCTGGCTCACGGCTGACTGTAACTTTCTTTCCAAGGGATCCATCTCCCTCTTTTGACCTCCACAGACAATGCACTCATGCAGTGCATGGATATACATGAAAGCAAAACAAAACCCATACATATAAAATACCATTTTAAAAACTATTTTTAAAAAATCTGCCTGTAACTCCAGTTCCATGGGATTCAGTGCTCGCTTTTCCACAGACAGGAGGCATGCACATGGTACATACATGTAAGCAAAACAACCATACACAAAAGTAAAATTGTACAACTGTTTTCTTCACATCCCTCAGTGTATGATCGTCTCCTTGAGTTCCACACAGTTCTTGTGCTATTGCCTCTCTCCCTAGACGCTGAGTTCAGCCCCTAAGACCACCTGCTTCTTGTGAAAGAGTGGGTGGGGACGGAGGGGTGAGAAGGCCCATCAAATTTCCTTTTCATCCTGGGCTCCTGGCCTACTTCCATGAGCTGGAATCCACTTGTGTAGTCTTTATCTTCTAATCAG
Seq C2 exon
GCAGAACTGCAGAACCGGACATCAGTGCTGCCCGAGGACCAGGATGTAGCTGAGGAGAGGAGCCGAATCCTGGTCCCTAGCTTGGACTCCATGCTCGACACACCACTGATCATCAACGAGCTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-Abca3:NM_013855:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(11.4=60.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: