MmuINT0007857 @ mm9
Intron Retention
Gene
ENSMUSG00000024130 | Abca3
Description
ATP-binding cassette, sub-family A (ABC1), member 3 [Source:MGI Symbol;Acc:MGI:1351617]
Coordinates
chr17:24497833-24501531:+
Coord C1 exon
chr17:24497833-24498034
Coord A exon
chr17:24498035-24501421
Coord C2 exon
chr17:24501422-24501531
Length
3387 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTCTTTCCATGGCACTCCAGTTG
3' ss Score
4.91
Exon sequences
Seq C1 exon
GTGCCAGCACATCATGCCCGTGAGCCCCAGGTCCCTCCAGATGTCCCTGGAGATCTCAGCGTTCCTGCTCCCTAGGGCTGTTGCTTCTGTCCAGGGGACCACTGGCTCCACCCCAGGGTCATCTGTGTAGAACTGCTGACGCCAGGCGACTTCACCCGTAGCCTTGCAGTGACACCTTCAGCCAACCTTTCCTGGAACTAAG
Seq A exon
GTCAGTTTCTGGTGCTGCCTCTGCAGTCTGCCTAGTGGGCGGTGAACTGGATGTCTTTTGCCGCTCTGGGCTTGAAAGGAATGGGAATAAGCAAGAGAGTGTTTATAATCTGGGACGATAACCAAAAAAGGGAACTGTCTGTGTCTTTAACCAGGATATTTTTATTTCCTTTTTGAGACAGGGTTTCGTGTAGCTCAGGTTGGCCTTGAACTGTGTGGTGGAGGAGGACGACCTTGAACTCTCCTTCATCCTGCCTGCTAGGTGCTAAGATTACAGGCATTTGCCACCATGCCCGGTGTATACAGTATATTCAATTGAGCCCAGAGTGTCCTGCTTCCCACTCTGCCAACTGAGCTATACCTGACCCCGAAAGCCTTTTGAACTGTGACCTTTTTTTATCCCTTTCTGGTGGAGGGAGAAAGTTCATCTCAGTCAAATGAGCCACTGGCGGCCTGGGTTGGCATAAACTGGAGCCTCCTGATCCCTTGTAGCTGAGATGTTTATGGAAACCTTTCTTTCATAAACACACATCTGCGATAATGATAATGGCTTAGTGGGTAAAGGCACTGCAGGTGACCTGATGACCTGAGTCTGACCTCTGGAACCCACATAGATGGGAAGAACTGACCCCCTAAGTTGTCTTCTGACCCACATCTACAAACAGTACGCACATAGAATAAATAACTCAAAATGTCATAACATTAAAAATTTAAAATAACCACAGGTCTTACCAAATCATTAAATCATTGCTCTTTATCAATCGTCTACCATTGTCTTGAAGACTTTATTGATAGGAGGTTTATTGGTGTGCTGTGGGTTTTGGTGGTTGTGGGTCTTTATTGTCTTTGTTGTTTTTGTTGTTGTTTTTTTTCCAGACAAGATCTCACTATGTGGCCCTGACTGGCCCAAAATTCATGGTGATCTACCTGCCTCTGTCTCCACCTCTCAAGTGCTGAAATTAAAGGCACACCCCACTGCTCCTGGCCAGGTGGAGTTTTTGTTTTTGTTTTTTGGTGTTTTTTTTTTTTTAAATATTTTTTATTACGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGTCCCCCCTACCCTTCCCCCCACTCCCCTAGCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCTTGTACTGGGGCATATAACGTTTACGTGTCCAATGGGGCTCTCTTTCCAGTGATGGCCCACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTGCACCTACAGGGTTGCAGATCTCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATTGGGGGCCCTAAAAATATGGAACGCTTCATGAATTTTCGTGTCATCCTTGCGCAGGGGCCATGCTAACCTTCTCTGTATCGTTCCAATTTTAGTATATGTGCTGCCGAAGCGAGCACTTTTTTGGTGGTTTTGAGACAGGGTTCAAACAGATACAGATCCGCCTGCCTCTGCCTCCAGAGCGCTAGGCATAGAGATGTGCACAGCCACTGCCTGGCTAGGGCTTAGCTCTTCCCCCCATGTGCTCTGCAGTCTCCAGCTGCTAAGTTAGCAGCAGGTTAGCGTTTGCACATTAATGAGTGACTCATGAATGATCTGACTGAGAGCTGCTGTTTGGTTAGTATTAGCCATGAACATAGAGCCGCTGAACTGGACGTAAACTGGACGTAAACTGTCCACGTGAGTCACCAGGCTTGTTCCCATGTGGAGAGGCTGATCTGGGAAGTGCTTTCTCCACTTGCTGCTCTCAGGAACCCCCTGGGGCTTCCTTCACCTTCTGTCTCATCCAGTTGTCACACCTGACTTCCATTCTTTGACGCATGGTACCCTCCTGATTGGGTGTTGCCGGCTTTACCTGAGTTTATTCAGACCACCCACTTCTCCATCAGGTTAGCAGCTCAGTGTCTCTGCTTTTTATCTTTGAAATGTAGTAAAATTTGTTTCAGTATGAAAGCATACATTTTGTTTTTGCTATCATTCATGTCTGATAAACATTTTTCCCTCCAGTTGTGTGTGCCAGAATTAAATGTTTACATTTATCTGTAATATAGGAGAGATACTTTTAGGACACATTTTCTCATGCCAGATGTGATGACATGTGCCTATAATTCTGTCAGGAGGCTGAGGCAGAGGCTCACTAAGAGGGCAAGAGTAGCCTGCGCTACTTAGTGAGTTTGAGACCAGCCTGGGCTACATGCCAAGACCCTATCTCAGTAACGGCGATGTGAAGGAGAGAGGGGCTGGCCACGTGTAGTGAAGATTTGGGTTTCCATATTTGTAATAATAGTGAGAGGAAAAACTGGCTAGGGATTCAAAAGACGACTGATTGTTTCTCTTGTACAACGGCCTGAGCCGCTGGGTTCCTGCGTCAGCAAAGCCATCGAAAGCCCCAGTCCTAGGCCTCGGCTTCTCTCTCCCTCAAGTCTTAAAAACCACCTGTAGCCAAGACACTAAGTTGAGTTTTCTTGTTTTTAGTTGGTTAATTTAGTACATGTGTACACACATACATATCATGATACAGGTATGGAAGTCAAAGGATACTTTTTAGTTCTCTTTTACCTTTACCTGTGTCCCAGGAGTCAAACTGGTTGTCAAGTGTGATTGCAAGCACTTTTCCCTCTCTGGCCTTGAGTTTTATTGTACTGGTTTTATATTGTGTAAGAATAAAGCCAGTCGCCGGGCAGTGGTGAGGCACACCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCTAGCCTTGTCTACAAAGTGAGTTCCAGGACAGCTAGGACTACACAGAGAAACACTGTCTCGAAAAACAAAAACAAAAGAATAAAGCCAGTCAAGGCTGGAAGTTCTGTAAGCCAGACATTTTGCTATATAATAGGACATGCATAATAACTAAAGCACCTGAGTAGTGTGGGTCAGATACTGAATACCACAACAGCAGTGGCGAGCCACAGAGCATGGTGCTGGGTGGGCAAAGGGTCTCAGTGGGTAAAGGTATTGGCCTCCAAGCCTGAGAACCAGAGCTGGACCCTCCAAACCCATGTGCTGGGAAGGAGAGAACAAACCCTACCAGGACAAGTTGTCTGTCCTCTGACCTCCACAGATACGCCAGGGCACTTGTAAGTGCACACATGCATGCCCACAAAAATAAATAAATAACATGCAATGAAGCATGCCGAGAAAAGAAACACAGCAGTTGCCCCAGAGTGCTTTCCTCTAAGGGCATGTTCAGGTTTCAGGGGGCAGAGAGGAATGTGAGAGAATATGGAGGGAAGGGCCTGTAGCGATTCCCCAGGTAACCACGCTCTCTTTCCATGGCACTCCAG
Seq C2 exon
TTGTCCATCTTTAAGTCTTGATCTCTGGTTGGTGTTGGCACTGTGCCAGCAAGAAGATGGCAGTGCTGCGGCAGCTCACCCTCCTACTCTGGAAGAACTATACCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024130-Abca3:NM_013855:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: