MmuINT0007946 @ mm9
Intron Retention
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110134640-110135713:-
Coord C1 exon
chr11:110135634-110135713
Coord A exon
chr11:110134696-110135633
Coord C2 exon
chr11:110134640-110134695
Length
938 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
GCATTTTTATGTTTTAATAGCAA
3' ss Score
6.11
Exon sequences
Seq C1 exon
CTTTTCTTCTATTTTGGCTTTTAAAATTCCAAAAGAAGATGTTCAGTCTCTCTCACAATCCTTCGCTAAGTTGGAAGAAG
Seq A exon
GCAAGTAGCATTTGAGAATATTGTAAAATAATTTTCAAGTAATGAAAGGATTCTAGTCAGAAAGTTTAGAACTGGGAGACAGGTTATTGTTGCAGTTATAGCAACTATAATCTTTTGTTCTTTTATTCTAAGATAAAAATATAAATATATGCCTATACATACACATATATTTAACAGTAATTTAAAAAGAAGAGATCAAGTCTTTGAGAGGGACTGTGGGAGTCGCGGGGGACTGTGGGAGACATGGGGGGACTGGGGAGACACAGGAGGACTGTGGGAGACACAGGAGGACTTCCGGTGGAATAATGCAAATTCAACCCTCATGGATATAATTCACAAAAATTTCAGAATTTGAAACATATATTGAATTTTTATCATTCTTTATGGGGATTCTGAGTAGGATAATATTTACTTCTATCTTATGTATCTTCATAGCTGTAGACTAATTATTAATTCTGAAATTTTTACTTCCTGATAATTTCTTTATGATTAAAAGAATAAATATACTAACAGAATTTCGTATTAGATTGGAAAAGTGGATTTGAAGTGAATATTGGAAGGCTTATAATGGCCAATGTTAAGAAATGAATTTAGGAATCTAGGACAGGCTGTAGTGGTGTTTGGAGAATGGGGGATAGAGATCTGACACCACAAGAAAACAAAGGAATGATGAAGAACAAGACGCTGGAGGGAAGGAGGAGCTAACCTAGAAAATGGAGCAGGTCACATGGGGGACAGTTGACGAAGTTGCTTACAGAGGATCAGTGTGGACCTGGACGAGAGAGAAGCAGGGCCGAGGGCAGTACCACACGTGGGCAGCTCCAGTTTGGAATACGTTGTTGACAGTTTTTAAAAAGCAGAGTAGATAGTTTAGAACTAGTTGCCATTTCACTCCTTAAAAATATCACTAAGTAAAATGCATTTTTATGTTTTAATAG
Seq C2 exon
CAAAACGCACTTTTGCCATTGAAGAATACAGCTTTTCTCAAGCAACCCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-Abca5:NM_147219:37
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: