RnoINT0010305 @ rn6
Intron Retention
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98577103-98578122:-
Coord C1 exon
chr10:98578043-98578122
Coord A exon
chr10:98577159-98578042
Coord C2 exon
chr10:98577103-98577158
Length
884 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
CTATTTTTACATTTTAATAGCAA
3' ss Score
5.93
Exon sequences
Seq C1 exon
CTTCTCTTCTATTCTGGCTTATAAAATTCCAAAAGAAGATGTCCAGTCTCTCTCACAGTCCTTTGCTAAGTTGGAGGAAG
Seq A exon
GCAAGTAGCATTTGAGAATACTGTAAAATGGTTTTCAAGTAAGGAAAGGGTTTTATTCAGAAAATTTAGAACTAGGAGTCAGGTTATACTTGCAGTTATAGAAAATGTAATCTTTTGTTCTTTTATTCTAAGTTAAATAAATATAAATGTATATACTCATCCTATATATTTAACAATAATTAAAAAGAGAAAAGGTCAAGTCTTTGAAAGGGGATGTGGGAAACACGGGAGAACTTCAAAGGGAATAATGCAAATTCAGTTCTCATGTATATAAGTCACAAAAACTTAAGAATTTGAAACATGTAGAGTTTTTATCATTTTCTAATGGGGATTCTGAATCGGACAATATTTACTTATATCTTATGTATCTCTGTAGCTGTAGACTAATTATTAGTTCTGAAATTTTTACCTTACTGATAATTTCTTTATAATTAAAAGAATAAGTATACTAAGAATTTGGTATTAGAAATTTGATATTAGAAGGTAGGATTTGAAGTGAAAACAGCAAAGCTGATAATGACCAATGATATGAAATGAATTTAAGAATCAAACCAGGCTCTAGTGGTGTTTGGAGAATGGGGACTAGGGCTCTGACACCACAAGGAAACAGAGGAGTGATGAAGAACAGGACACTGGAGAGGAGGAGGCGCTGACCCAGAAGAAGAAGCAGGCCACAGCACAGGTGATGCAGTTGTCTACAGAGGGCCAGCAGTGGGCGTGGAAGGGACAAGAAGCAGGGCTGAGAGAATAACAACTTGGACAGCTTCAGTTTCCAAGAAGTTGTTGACAGAGTTTTAAAAAGCAGAGTAGATTCTTTAGAACTAATTGCCATTTCACTCCTTAGAAGTATCACTAAGTAAAATGCTATTTTTACATTTTAATAG
Seq C2 exon
CAAAACACACTTTTGCCATTGAAGAATACAGCTTTTCTCAAGCAACCCTGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378:ENSRNOT00000005848:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]