MmuINT0008006 @ mm10
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80006886-80007228:+
Coord C1 exon
chr10:80006886-80006922
Coord A exon
chr10:80006923-80007135
Coord C2 exon
chr10:80007136-80007228
Length
213 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GAAGCCCGTTGGTTCCACAGGTG
3' ss Score
7.4
Exon sequences
Seq C1 exon
ATCTTCCTAAAGGTGGTGGAGGATGCGCACAGAGAAG
Seq A exon
GTGTGTCTTAGCTCTGTGAGCCTTCAAACCAGGCCTGAGCCCCCCCCCCCCCTTGGCTGGGTCTTTCCTAGTTGCTGAACCCTGAGTCCCTCCCTGGCACTGGCAACAAGTCCTCCCTTTGAATTCCGGCCTCCATTTTCCCCAGAGGCTCTGGCTTCCTTTTCCCTGGAAGCAAGACCCTGTCCCCAGCCCTGAAGCCCGTTGGTTCCACAG
Seq C2 exon
GTGGGGACTCTAGACCGCAGCTGCACCTTCGCACATGCACTCCACAGCCCCCCACAGGGCCAGAGGCATCAGTTCTGGAGAATGGGGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722:ENSMUST00000132517:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.823
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types