RnoINT0010367 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12750507-12750815:-
Coord C1 exon
chr7:12750773-12750815
Coord A exon
chr7:12750600-12750772
Coord C2 exon
chr7:12750507-12750599
Length
173 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
3' ss Seq
GAAGCCTGTTGGTTCCACAGGTG
3' ss Score
7.68
Exon sequences
Seq C1 exon
ATCTTCCTGAAGGTGGTGGAGGAAGCACACGCACACGGAGAAG
Seq A exon
GTGCGTCTTAGCTCTGTGGCCCTTCGACCCAGCCCTGGTCCAGAGTCAAACCAGGCCTCAGACTCCTTTCCCATCCTTGACTGGGAATGGCCTCCATTTTCCCCAGAGGTTCTGGCTTCTGTTTCCCTGGAAGTCAGACCTGTCCTTAGCCTTGAAGCCTGTTGGTTCCACAG
Seq C2 exon
GTGGTGACCCCAGACAGCAGCAGCACCTTCTCACAGCCACTCCGCAGCCCCACACAGGGCCAGAGGCATCGGTTCTGGAGAATGGGGAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGAAGGTGGTGGAGGA
R:
CTCCCCATTCTCCAGAACCGA
Band lengths:
130-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]