MmuINT0008833 @ mm10
Intron Retention
Gene
ENSMUSG00000029299 | Abcg3
Description
ATP-binding cassette, sub-family G (WHITE), member 3 [Source:MGI Symbol;Acc:MGI:1351624]
Coordinates
chr5:104969395-104974131:-
Coord C1 exon
chr5:104973979-104974131
Coord A exon
chr5:104969532-104973978
Coord C2 exon
chr5:104969395-104969531
Length
4447 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
AATGGTCATTGATGCTTTAGCCT
3' ss Score
3.55
Exon sequences
Seq C1 exon
AATGATGTGGTGTTGGGCACAGTGACCGTGAGAGACAATTTAGAGTTCTCAGCAGCTCTTCGTCTCCCAGTGACTATAACAAGAGATGAAAAGAGAAGGAGGATTAATGAGGTGCTTGAACTTCTGCATCTGAATAAAGAACAAAATATCAAG
Seq A exon
GTAAGATGTGAGGAAAAATATTGAAAGACTCATAGCAAGAGAAAGAGAGAGAGAGATCTGTGTGTGGATGACATGCCCCTCCACAAGCTGTTTCCTGTAGTTTGTGTGGTCAAAGGTGGCTGCTTTCTCTGTTAATGACTAAGTGACTGGGTACATGATGTTAAGGTGGAAATTAAGCTGTAAAGCCATCTTAATAATGGTTGAGCCTGGGAATGGAGAGTGATCCAGCGGGGAAAAGTGCTCCTCACATGGCCATTTCAAGTCTTCCTCACATGACATCTCTACCCTTAGTGTTAAACTCATGACTCATCTGAGAATTTGATGAGTTTTCTTTTTCTGTTGACCTTCCCTTCCTCTAGAGTGGTGGTTCTCAATTTTCTAAATGCTGTGGCCCTTTAATACAGTTCCTCATTCCTGGTTACCCACAAGCACAAAATTATTTTGTTGGTACCTTATAACTGTAATTTTGCTACTGTTGTGAATCCTAATGTAAATGTCTGATATGTGACCCCTAAGGGAGTGGTGACCCACAGGTTGAGAAGCCATGACCCAGAGTTACTTTGTTCCCTTGTTGTTTCAAATGTATTTCTGGAACTGACCTGTGCTGCAAGACTGAGGACTCTGGCTTTGTGCTTCTCCCTACCTTAATTTTTCTTGCAGGTTGTACTTGGTCTCTGACATCCTCTTCTAACTTATTTAGTGCTTGTTATTTTTTGTAGCCTCTTGTTTTGTGTTTTTATCTCATCCCATCTAAGGTGGTTAGTTCTGACTGTCTACTTGACACAATCTACAATCCCTTGGAACCATCTAGAAAATGAAGAATACTCTAGTCACGTGGTTTGTGGACATTTCTATAGGTGCTTGTCTTCATTAAGTTAAACCATGAGGGAAGACCCAGCCCACTGCAGGCTGCAACCTTCTTTGGGCTTGGGTCCTTGGGTGGTGGAAGAATGGAGAAGGTGAGCTGAGCACTGGCAGGCAGGTGTGCATTCTCGCTGTGCTCTGGACTGCATGCAACCAGCTGCAACATGCTCCTGCCTTGACTGTCCTGCAATGATTGACTGCACTTCTGAACTGTGCTCTGAAACAAACCTTTAGCACCATGTGTACTTTCATCAGAACATTTCGTCTCAGCAACGAGACGGAAAACTAGGATATCCTTTTGCCCTTGCTCCCTGATTCCCTTTCTTCTGACAACATTTACTCCCAGGTTCTGTATAAGGTTTCAGAGATAGAGCCTTGGTCAAGAGCAACAGTGAATTGACCAACTGTCTCCTGGGGAAGCTTGTGCAGGACCAGGAAGGGCAATAGATGAGTGGTGAGGTTCATAGCTGACCATGTAGTGGATAACATGTTTCCTTTTTTTTTCTTTTTAAAAATATTTATTTAATGTATATATGTATACTGTAGCTGTCTTCAGACACACCAGAGGAGGGCATAGGATCCCATTACAGATGGTTGTGAGCCACCATGCATTTGCTGAAAATTGAGCTTAGGACCTCTGGAAGTCAGTGCTCTTAACCACTGGGCCATCTCCTAATAATCAGTTTTTTACTGACATATTAAAGGGAATATTACATAGCACCTCACTCCTGAGTACTGAATTATTCTTCATCTCTTTAAAAGGACATTTACTTACCTTAACAATTCCATTCTTAACTATCAAAATGAACATATCCTTGCCATGCTCAGCTCTGTCAGGTCTATAACCCTTCACAGTCCCCAAATGTCCTTGATTATTTCATTGCTAATAGAACCTGATCAGGAACTTTATAATATGCTTCAAGTTTTTAAATATCTTTATTTAGATATTTATTTACAGGGTTGTTTCCCTCTTTTTGGGTCCCCAAAACCTTCCTGCCTCTCACCATGACATTGATTCATGGAGAAGATTAAATGTAGATATTTGGTGAATGGACATTGGGTGCTATGGATGGAAGTGGCTTAAATGAAGGTAATTCTCATGACTTACCTCCTGTGCTGGCCATTTGTTAGAACAACGAGGACTAGGGTGGCACTGGCTGTTGATTCTCTTTAATCTTCTATGAGACACTTGTCTTGGTGAGAAGAATGTCACAAATGCTGCCATTCACCATGTTTTCTTTCTTCCTGAGTAATAGAAATCTGTTTGCTTTGGCCCTTTTTATAACTTGGTTTTATATTTAAAATGAAGTGCTTTATTTTGTTTCAAACAGTAAGTAGTAGTCAGCGCCCTAAGTTGCTTACTTGATTTTTTAGTGACAACCAATAAAGATATTTATTAACTCCTTGAAGGTCATGAAGTATAAAAGATTTCAAGAATTTTAATCATGAAACTTTTTAATAATCACTTTGAAAAAGTGTGTGTGTTACTGTGTGTGTTTGTGTGTAGCTGTGGGTGTGAGTGTGTGGATGTGAGCCTGTGGGGTGTGTGTGTGTGTGTGTGTGTGAATGTGTGTATGTGAGTGTGTGTGTGAGGGTTATGTGTGTGAGTGTGTATGTGTGTATATGTAAGTGTGTATGAGCCTGTTTATGTCCCTTCCTGAGGCTCACTGCACACACAGTAAGGTCATAGGACATTGTATTCAGGGTTCATTCCCACCTGGTATCCCGAGCTAGTATCTCGCCAGCAAGAATTCACTCGGACAACCAGATTCTTCTACGGCAAAGCTTTATTGCTTCATCAGAAGGAAGACCCCGAACAAGGAAAATGGTGCTGCTTATATACCCCTCCGTGTGACGTGTCAGCTCCTGATTAGCTGCTCACTCATTACCCCACTACTACGCCCCGGGGTGGGCAGTGACTTGACAGGAATTTACTCTTGCACCTGTGCACATTACTTGTTTACCAGTTACGCACAGTGGAGGCTCATGATGGCGATTGCTCACGGCTCTCCACAACCTGGTATGGAGGCAGGGTCTGGCTCCTGCTGCTGCTTTACCTGCAAGCTTATGCTCCTCTGTTCTCACTGTAATTACATTCTGATGAGCTACAGATGCATGCCACTGCATGTAGCTTTCTATGAGAGTTTCAGGGATTGAACCCAGGCTTCAGGCTTGTGTGGCTTTCCCCTGCTAAACCTCTTCAGCTGTCATAGACTTCGATATAAGAAACATAGAGGAGAGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGACAGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGCCTCATAACCATTTGTAATGGGATCTGACGCCCTCTTATGGTGTGTCTGAAGACAGTGTACTCACACATATAAAATAAATAAACCTAAAGAAAAGAAACTTAGAGGAAACATAGTTACCATAGCAATGTGATTGTCATGTAGTCAGCACAGTAGTGTATTTGCTAATACCAGCCTTTGGGCTTCTGAGTCGGTTGTATTTTATCTCATACTTGCTAAAGCTATTTTTCATGGGAGTATTTTAAATGAACACTAGGCAGTATTTTACTCCTGAGAACTTAATTACATTTCATTCATCAAAGCAAGGACATATGCAAATCTATAAATTCTAAACTATCAAGATGAATAATTCCTTTGTATCGTCAGCCTTGTCATGTCCACATTCTTCCACATCCTTCAACATTCTTTATTGTATGTTATCAGTAGGGCTTAATCATGGTTTTGTTTAGTAAACTTAGTGAGTTTAAGCTTCAGAATTGTTCCCTATTTCTTTATCCCTTCAACCTTCCTGTGATTTACCTTACACATTGACACTGTCTGGTTTAAAAAGACAGTTCCAGTTTGGCCTGAAGAATGGCCCACTTTTTTTTTTTTTTTTTTTTTTTTGTATTTGCCTATAAGGGTGAGAAATTAATTCTTAGTTGCTGTCCAGTGTAAGTGATGTCAATTCACAAAGTCTTAAGGAACTTGAAAAATGTACTAAGAAGGCAATTTGAACGTTCCACTTAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAAACAAAAAAAAACAAACAAACAAAAAAAAAGGAATGTTTGCTAAAAGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTGGGGTGTTGTTAAACGATTACAAAATTACTAGAGATATTTTATCTTCTCCTCTCTCATTTTCCTCATTTCTTTAGACAGTGATCTCACTATGCTGGTCTTTGCTTGTGATAACTCATCCCATAGAATACGCGACTTGATAATGAACAAACAATAAGTGTTATTAATATGGCTACATGTCAAGTCTGATCTGAGCCTCATTCTACACTTTAGTTAGGAAAGAAACTTCCTTCTTTTCCCAGGTGCCCATGTTTTCTTTCTTTGGAATAATGATTTAACACAATCTTTTATTGCTGGAACAAGCTAGTTCACCAAACGATAATGACTATGTTCTTGTTGATAACAATGGTCATTGATGCTTTAG
Seq C2 exon
CCTAGATCCAAAGAACTCAGGAAAAGGACCAGTATAGCAATGGAGCTGGTCACTGAGCATCCCATTTTGTTCTTGGATGATCCCACAACTGGCTTAGATTTGAGAACTACGACTGATGTCATTTTAGTCCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029299:ENSMUST00000031239:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(34.7=100)
A:
NA
C2:
PF0000522=ABC_tran=PD(20.1=63.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types