MmuINT0011187 @ mm10
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:27006177-27006798:+
Coord C1 exon
chr2:27006177-27006323
Coord A exon
chr2:27006324-27006621
Coord C2 exon
chr2:27006622-27006798
Length
298 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TCACTGCCTGCCCTTCCTAGGGG
3' ss Score
9.47
Exon sequences
Seq C1 exon
GTGCCTGTGGAAGGCAGTACCTGGAGCCCACAGGAACCATTCACATGCGAGATCAAGGACGGCTAGACTGTGTGGTGGCCATTGGGAGACCTCTAGGTGAAGTGGTGACCCTACAAATCCTTGAGAGCTCCCTCAAGTGTAGTGCAG
Seq A exon
GTACATCTGCAGTCATGTGGGCAACTGCTGAGCTGGGGCTCTGGCACACAACTCCAGTGTACCCCACTTCTGGCAGGATGCCCCTGCTACACTCCTACTTCTCATGACTGGAGTGTGGCGATATCCATTTCTAAGATAGAGAACTGGGGGGGATGAGAGCTCTGGTGACGTGCCTCCTACTTTGTCACATTAGCCAGTAAGAGGGAGAGTGGTAATTGGAACTCAGCCCTGAGCAGCTGCTGCCAACGTGAAGTGTGGAGCGGGGGGTTGCTGTTTCCTCACTGCCTGCCCTTCCTAG
Seq C2 exon
GGGAGCAACTGCTGCTCTGGGGTAGGTTCACATGGAGGAAGACATGCAGGAAGATGCCTGGCATGACTTTCAGCACCAAAACCAACACAGTGGTGGTGAAGCAGCATCGTGTGCTGCCAGGGGGTGGAGTGCTGCTACGGTACTGGAGTCAACCTGCCCCGGGGACCTTCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852:ENSMUST00000102891:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACAGGAACCATTCACAT
R:
CTTTGTAGAAGGTCCCCGGGG
Band lengths:
299-597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types